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What Do GNNs Actually Learn? Towards Understanding their Representations

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arxiv 2304.10851 v2 pith:6QUNNKYD submitted 2023-04-21 cs.LG

classification cs.LG
keywords representationsmodelslearnednodesgnnsnodefeaturesfind
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abstract

In recent years, graph neural networks (GNNs) have achieved great success in the field of graph representation learning. Although prior work has shed light on the expressiveness of those models (\ie whether they can distinguish pairs of non-isomorphic graphs), it is still not clear what structural information is encoded into the node representations that are learned by those models. In this paper, we address this gap by studying the node representations learned by four standard GNN models. We find that some models produce identical representations for all nodes, while the representations learned by other models are linked to some notion of walks of specific length that start from the nodes. We establish Lipschitz bounds for these models with respect to the number of (normalized) walks. Additionally, we investigate the influence of node features on the learned representations. We find that if the initial representations of all nodes point in the same direction, the representations learned at the $k$-th layer of the models are also related to the initial features of nodes that can be reached in exactly $k$ steps. We also apply our findings to understand the phenomenon of oversquashing that occurs in GNNs. Our theoretical analysis is validated through experiments on synthetic and real-world datasets.

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Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Positional Encoding meets Persistent Homology on Graphs

    cs.LG 2025-06 reject novelty 7.0 of 10

    PiPE combines positional encodings with persistent homology features in a message-passing framework and is claimed to be provably more expressive than either approach alone, with empirical gains on molecular benchmarks.

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