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Quantifying the Contributions of Training Data and Algorithm Logic to the Performance of Automated Cause-assignment Algorithms for Verbal Autopsy
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A verbal autopsy (VA) consists of a survey with a relative or close contact of a person who has recently died. VA surveys are commonly used to infer likely causes of death for individuals when deaths happen outside of hospitals or healthcare facilities. Several statistical and algorithmic methods are available to assign cause of death using VA surveys. Each of these methods require as inputs some information about the joint distribution of symptoms and causes. In this note, we examine the generalizability of this symptom-cause information by comparing different automated coding methods using various combinations of inputs and evaluation data. VA algorithm performance is affected by both the specific SCI themselves and the logic of a given algorithm. Using a variety of performance metrics for all existing VA algorithms, we demonstrate that in general the adequacy of the information about the joint distribution between symptoms and cause affects performance at least as much or more than algorithm logic.
Forward citations
Cited by 3 Pith papers
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Calibration of answer probabilities in verbal autopsies: Working Paper
Imputation accuracy over left-out question blocks can identify and roughly correct wrong cause-of-death probability tables in verbal autopsies using only unlabeled questionnaires, under a block-conditional-independenc...
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Bayesian Hierarchical Factor Regression Models to Infer Cause of Death From Verbal Autopsy Data
FARVA, a hierarchical factor regression model, lets the mean and covariance of verbal autopsy symptoms depend on cause and covariates, and predicts cause of death and cause-specific mortality fractions more accurately...
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Flexible Bayesian Tensor Decomposition for Verbal Autopsy Data
Grouping symptoms into clusters and modeling each cluster with a separate latent class improves cause-of-death assignment and interpretability in verbal autopsy data.
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