Paper Citation Record · LEDGER

BarcodeMamba: State Space Models for Biodiversity Analysis

As of 14 August 2026, this Paper Citation Record lists 24 of 24 outbound references and 0 inbound Pith citation observations for arXiv:2412.11084.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2412.11084 v1

Coverage vector

measured 24 of 24 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-11T15:22:51.289757Z

measured 24 of 24 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-14T06:32:32.682623+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

24 of 24 outbound references displayed

verified exact0
verified fuzzy10
unresolved14
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation f7c2c877-bb4f-4933-989c-80dc7c86048d · outbound

This paper cites Wang, Scott C.

BarcodeMamba: State Space Models for Biodiversity Analysis Wang, Scott C

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.659078Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 919eb16c-05d2-4ef3-98a5-e6118b4f5eb8 · outbound

This paper cites Fine-grained zero-shot learning with dna as side information.

BarcodeMamba: State Space Models for Biodiversity Analysis Fine-grained zero-shot learning with dna as side information

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.644641Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation bb94d769-453d-4743-871a-91d073ee9124 · outbound

This paper cites A Cookbook of Self-Supervised Learning.

BarcodeMamba: State Space Models for Biodiversity Analysis A Cookbook of Self-Supervised Learning

Reference 3

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.190883Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 89f3bfeb-d436-4a47-8115-4ebc7b006159 · outbound

This paper cites To Transformers and Beyond: Large Language Models for the Genome.

BarcodeMamba: State Space Models for Biodiversity Analysis To Transformers and Beyond: Large Language Models for the Genome

Reference 4

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.196031Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 448ea2da-ec4c-477a-9bfe-b952e4c18f80 · outbound

This paper cites The nucleotide transformer: Building and evaluating robust foundation models for human genomics.

BarcodeMamba: State Space Models for Biodiversity Analysis The nucleotide transformer: Building and evaluating robust foundation models for human genomics

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.630766Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation e339df77-c28b-422d-83fa-3ab722838fe1 · outbound

This paper cites Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Duality.

BarcodeMamba: State Space Models for Biodiversity Analysis Transformers are SSMs: Generalized Models and Efficient Algorithms Through Structured State Space Duality

Reference 6

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.205459Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation c081e3f9-1d0b-47f7-8928-b480a208399b · outbound

This paper cites A reference library for canadian invertebrates with 1.5 million barcodes, voucher specimens, and dna samples.

BarcodeMamba: State Space Models for Biodiversity Analysis A reference library for canadian invertebrates with 1.5 million barcodes, voucher specimens, and dna samples

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.616375Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 463a322d-a431-4652-9052-e91cf9043240 · outbound

This paper cites Gena-lm: A family of open-source foundational models for long 8 dna sequences.

BarcodeMamba: State Space Models for Biodiversity Analysis Gena-lm: A family of open-source foundational models for long 8 dna sequences

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.214803Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation cf316268-6348-416e-8f1d-740977b11d18 · outbound

This paper cites Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T.

BarcodeMamba: State Space Models for Biodiversity Analysis Lowe, ZeMing Gong, Pablo Millan Arias, Nicholas Pellegrino, Austin T

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.601979Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation b5bed41a-e369-43a3-9280-8546f2c825d2 · outbound

This paper cites Genomic benchmarks: a collection of datasets for genomic sequence classification.

BarcodeMamba: State Space Models for Biodiversity Analysis Genomic benchmarks: a collection of datasets for genomic sequence classification

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.224042Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7d6233b9-1bab-4ce3-a2ae-f88c3cdbb361 · outbound

This paper cites Mamba: Linear-Time Sequence Modeling with Selective State Spaces.

BarcodeMamba: State Space Models for Biodiversity Analysis Mamba: Linear-Time Sequence Modeling with Selective State Spaces

Reference 11

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.228152Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 08db1ebc-dc74-4130-a62b-40aa29a34c05 · outbound

This paper cites Efficiently modeling long sequences with structured state spaces.

BarcodeMamba: State Space Models for Biodiversity Analysis Efficiently modeling long sequences with structured state spaces

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.232634Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation fff6d2ba-972b-4611-af77-4c7a9f7ab34c · outbound

This paper cites Biological identifications through dna barcodes.

BarcodeMamba: State Space Models for Biodiversity Analysis Biological identifications through dna barcodes

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.563372Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 689f1c5c-4925-4f65-b850-fd93f4290c33 · outbound

This paper cites Dnabert: pre-trained bidirectional encoder representations from transformers model for dna-language in genome.

BarcodeMamba: State Space Models for Biodiversity Analysis Dnabert: pre-trained bidirectional encoder representations from transformers model for dna-language in genome

Reference 14

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.241217Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 0aef258d-ac34-494e-98d1-bc3ab1f0b14b · outbound

This paper cites Scaling Laws for Neural Language Models.

BarcodeMamba: State Space Models for Biodiversity Analysis Scaling Laws for Neural Language Models

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.245418Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation b656a64a-e17a-4d79-b16f-7ef37bd9bac9 · outbound

This paper cites The insect cytochrome oxidase i gene: evolutionary patterns and conserved primers for phylogenetic studies.

BarcodeMamba: State Space Models for Biodiversity Analysis The insect cytochrome oxidase i gene: evolutionary patterns and conserved primers for phylogenetic studies

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.532292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 647cdf39-b8e6-4127-8dc7-2694195e235f · outbound

This paper cites BEND: Benchmarking DNA language models on biologically meaningful tasks.

BarcodeMamba: State Space Models for Biodiversity Analysis BEND: Benchmarking DNA language models on biologically meaningful tasks

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.518849Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 0206f1b6-3c5f-46a3-b29a-05a3f0ab9737 · outbound

This paper cites Taxonomic classification of dna sequences beyond sequence similarity using deep neural networks.

BarcodeMamba: State Space Models for Biodiversity Analysis Taxonomic classification of dna sequences beyond sequence similarity using deep neural networks

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.502879Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation cb36f512-49d9-4bb5-9c56-4a480e45561b · outbound

This paper cites Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution.

BarcodeMamba: State Space Models for Biodiversity Analysis Hyenadna: Long-range genomic sequence modeling at single nucleotide resolution

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.265580Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 6a777842-1219-4c9d-a936-996955312cd5 · outbound

This paper cites Bold: The barcode of life data system (http://www.

BarcodeMamba: State Space Models for Biodiversity Analysis Bold: The barcode of life data system (http://www

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-11T15:22:51.474314Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 428922ab-476c-4e7e-8a91-6e53886d7a38 · outbound

This paper cites an unresolved cited work.

BarcodeMamba: State Space Models for Biodiversity Analysis Unresolved cited work

Reference 21

Resolution: unresolved; raw_fallback, observed 2026-08-11T15:22:51.457073Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-14T06:32:32.682623+00:00.

Observation 5fa12bf8-9c09-4c89-945c-1ff3751493b6 · outbound

This paper cites Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling.

BarcodeMamba: State Space Models for Biodiversity Analysis Caduceus: Bi-Directional Equivariant Long-Range DNA Sequence Modeling

Reference 22

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.281067Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 55cdfb2d-2a7c-427f-b3a0-337ca71761be · outbound

This paper cites Attention is all you need.

BarcodeMamba: State Space Models for Biodiversity Analysis Attention is all you need

Reference 23

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.285751Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e81aa89e-5659-42cf-a812-c4baf618271d · outbound

This paper cites DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome.

BarcodeMamba: State Space Models for Biodiversity Analysis DNABERT-2: Efficient Foundation Model and Benchmark For Multi-Species Genome

Reference 24

Resolution: unresolved; no resolver link, observed 2026-08-11T15:22:51.289757Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Pith citing papers

No inbound Pith citation observations are available.