Paper Citation Record · LEDGER

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery

As of 8 August 2026, this Paper Citation Record lists 32 of 32 outbound references and 0 inbound Pith citation observations for arXiv:2505.23823.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.23823 v2

Coverage vector

measured 32 of 32 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T13:24:26.323698Z

measured 32 of 32 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

32 of 32 outbound references displayed

verified exact1
verified fuzzy19
unresolved11
parse uncertain1
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 9f45aacd-f014-4d66-aa71-d681d6bbc32d · outbound

This paper cites GPT-4 Technical Report.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery GPT-4 Technical Report

Reference 1

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:24.091765Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3492f0da-b9ee-4a5e-bff3-34c754cca85d · outbound

This paper cites Gemini: Google’s large language models.https://gemini.google.com/,.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Gemini: Google’s large language models.https://gemini.google.com/,

Reference 2

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:29.697904Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 535cdf4c-2738-4c84-8e14-d34073111f33 · outbound

This paper cites Gemini 2.0 flash | generative ai on vertex ai, February 2025.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Gemini 2.0 flash | generative ai on vertex ai, February 2025

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:29.392938Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 51410d72-bad7-4578-bcfb-9c817d216e06 · outbound

This paper cites Deepseek-v3.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Deepseek-v3

Reference 4

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:29.158479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 7386f517-7b6e-4f93-8811-6b437773b33c · outbound

This paper cites Bert: Pre-training of deep bidirectional transformers for language understanding.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Bert: Pre-training of deep bidirectional transformers for language understanding

Reference 5

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.927843Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 122eb2f5-86df-4f20-9375-587d0ec45c52 · outbound

This paper cites Drug discovery: a historical perspective.science, 287(5460):1960–1964, 2000.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Drug discovery: a historical perspective.science, 287(5460):1960–1964, 2000

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.800651Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 3d957dc7-f359-478d-b41a-2654569ad48a · outbound

This paper cites Accelerating therapeutics for opportunities in medicine: a paradigm shift in drug discovery.Frontiers in pharmacology, 11:770, 2020.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Accelerating therapeutics for opportunities in medicine: a paradigm shift in drug discovery.Frontiers in pharmacology, 11:770, 2020

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.645259Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2934ec8b-b5d3-40e6-a4e6-cdd50a4955ff · outbound

This paper cites Survey of hallucination in natural language generation.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Survey of hallucination in natural language generation

Reference 8

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:24.698824Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 19cf8a96-9a5a-4dff-a94c-7b2b15d923fa · outbound

This paper cites Genegpt: Augmenting large language models with domain tools for improved access to biomedical information.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Genegpt: Augmenting large language models with domain tools for improved access to biomedical information

Reference 9

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.514245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation e3ca7b7a-8267-4132-92a4-1ec7e260d430 · outbound

This paper cites Generalization through Memorization: Nearest Neighbor Language Models.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Generalization through Memorization: Nearest Neighbor Language Models

Reference 10

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:24.830772Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 42febe10-3667-4721-a14c-fadfc2cd9e49 · outbound

This paper cites Jsl-medllama-3-8b-v2.0, 2024.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Jsl-medllama-3-8b-v2.0, 2024

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.395873Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 446c00f6-d223-4ce7-aa54-2c5a6917720f · outbound

This paper cites Retrieval-augmented generation for knowledge-intensive nlp tasks.Advances in Neural Information Processing Systems, 33:9459–9474, 2020.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Retrieval-augmented generation for knowledge-intensive nlp tasks.Advances in Neural Information Processing Systems, 33:9459–9474, 2020

Reference 12

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:24.964176Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 591a3c72-70b3-4a57-ad1d-e3027bdaff94 · outbound

This paper cites Understand the dynamic world: An end-to-end knowledge informed framework for open domain entity state tracking.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Understand the dynamic world: An end-to-end knowledge informed framework for open domain entity state tracking

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.254839Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 2346e570-5ff9-4d55-a65e-bc4ae44758c3 · outbound

This paper cites GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery GraPPI: A Retrieve-Divide-Solve GraphRAG Framework for Large-scale Protein-protein Interaction Exploration

Reference 14

Resolution: verified exact; local_arxiv, observed 2026-08-07T13:24:26.469494Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 89e89ad2-aa71-4de3-a8fc-4f303378668d · outbound

This paper cites Rouge: A package for automatic evaluation of summaries.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Rouge: A package for automatic evaluation of summaries

Reference 15

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:25.199362Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 17e35d28-ef96-4bcb-a889-671a887b2491 · outbound

This paper cites What is retrieval-augmented generation? IBM Research Blog, 22, 2023.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery What is retrieval-augmented generation? IBM Research Blog, 22, 2023

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:28.089153Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation cafb7291-85d8-4f0c-9417-96028d2f73c2 · outbound

This paper cites FActScore: Fine-grained Atomic Evaluation of Factual Precision in Long Form Text Generation.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery FActScore: Fine-grained Atomic Evaluation of Factual Precision in Long Form Text Generation

Reference 17

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:25.320503Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 7d3d3514-15a6-4591-a5e5-1e93a0bf354d · outbound

This paper cites Chatgpt: Optimizing language models for dialogue.https://openai.com/ chatgpt, 2023.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Chatgpt: Optimizing language models for dialogue.https://openai.com/ chatgpt, 2023

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:27.916992Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 769d53d3-59e2-4517-96d5-722fe91d9b04 · outbound

This paper cites Introducing gpt-4.1 in the api, April 2025.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Introducing gpt-4.1 in the api, April 2025

Reference 19

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:27.757321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation dadf910d-3c2c-47f0-86cd-799143faf75f · outbound

This paper cites The biogrid database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.Protein Science, 30(1):187–200, 2021.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery The biogrid database: A comprehensive biomedical resource of curated protein, genetic, and chemical interactions.Protein Science, 30(1):187–200, 2021

Reference 20

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:27.592941Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation f7c8d489-9ed3-4ddd-9acf-13f4bdd6f1fd · outbound

This paper cites Target identification approaches in drug discovery.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Target identification approaches in drug discovery

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:27.451063Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 0f71f2dd-73ab-44b7-b2a4-2559c034f4cf · outbound

This paper cites Druggen: Advancing drug discovery with large language models and reinforcement learning feedback, 2024.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Druggen: Advancing drug discovery with large language models and reinforcement learning feedback, 2024

Reference 22

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:27.303478Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 83640ca3-4cd3-4781-a68f-be72aeb7b87c · outbound

This paper cites Proteoform: a single term describing protein complexity.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Proteoform: a single term describing protein complexity

Reference 23

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:27.166325Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 9eeccf68-818c-416d-9363-e08e1539d68f · outbound

This paper cites an unresolved cited work.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Unresolved cited work

Reference 24

Resolution: unresolved; raw_fallback, observed 2026-08-07T13:24:27.030845Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 7d81da2a-02ad-4c7c-96ea-1a14ccd59151 · outbound

This paper cites an unresolved cited work.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Unresolved cited work

Reference 25

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:25.933388Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3811d548-69f8-4726-9ccc-82527f0ec611 · outbound

This paper cites Llama: Open and efficient foundation language models.https: //github.com/facebookresearch/llama, 2023.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Llama: Open and efficient foundation language models.https: //github.com/facebookresearch/llama, 2023

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:26.889255Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 758af260-172d-4f8b-9793-d27b72a927bb · outbound

This paper cites Estimated research and de- velopment investment needed to bring a new medicine to market, 2009-2018.Jama, 323(9):844–853, 2020.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Estimated research and de- velopment investment needed to bring a new medicine to market, 2009-2018.Jama, 323(9):844–853, 2020

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:26.779533Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation d80a01f8-a06c-477f-96e0-5617659504e7 · outbound

This paper cites Grok-2-1212.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Grok-2-1212

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-07T13:24:26.634483Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Observation 8a29e5f0-ea98-49f7-bbaa-bcbbc46285e5 · outbound

This paper cites The Knowledge Alignment Problem: Bridging Human and External Knowledge for Large Language Models.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery The Knowledge Alignment Problem: Bridging Human and External Knowledge for Large Language Models

Reference 29

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:26.205642Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 395e563c-30d2-4a3e-befa-b9eb06655b7a · outbound

This paper cites BERTScore: Evaluating Text Generation with BERT.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery BERTScore: Evaluating Text Generation with BERT

Reference 30

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:26.280972Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 3038312e-e967-49c5-a8a6-e120f76914d7 · outbound

This paper cites Siren's Song in the AI Ocean: A Survey on Hallucination in Large Language Models.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Siren's Song in the AI Ocean: A Survey on Hallucination in Large Language Models

Reference 31

Resolution: unresolved; no resolver link, observed 2026-08-07T13:24:26.323698Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 964b82aa-467b-46a5-b0d2-78a275fc8ae5 · outbound

This paper cites an unresolved cited work.

RAGPPI: RAG Benchmark for Protein-Protein Interactions in Drug Discovery Unresolved cited work

Reference 2024

Resolution: parse uncertain; raw_fallback, observed 2026-08-07T13:24:29.549278Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

Pith citing papers

No inbound Pith citation observations are available.