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Sparks of Science: Hypothesis Generation Using Structured Paper Data

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arxiv 2504.12976 v1 pith:CJOVXLLM submitted 2025-04-17 cs.CL

classification cs.CL
keywords datasetgenerationhypogenhypotheseshypothesislanguageoverallquality
verification ladder T0 review T1 audit T2 compute T3 formal
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Generating novel and creative scientific hypotheses is a cornerstone in achieving Artificial General Intelligence. Large language and reasoning models have the potential to aid in the systematic creation, selection, and validation of scientifically informed hypotheses. However, current foundation models often struggle to produce scientific ideas that are both novel and feasible. One reason is the lack of a dedicated dataset that frames Scientific Hypothesis Generation (SHG) as a Natural Language Generation (NLG) task. In this paper, we introduce HypoGen, the first dataset of approximately 5500 structured problem-hypothesis pairs extracted from top-tier computer science conferences structured with a Bit-Flip-Spark schema, where the Bit is the conventional assumption, the Spark is the key insight or conceptual leap, and the Flip is the resulting counterproposal. HypoGen uniquely integrates an explicit Chain-of-Reasoning component that reflects the intellectual process from Bit to Flip. We demonstrate that framing hypothesis generation as conditional language modelling, with the model fine-tuned on Bit-Flip-Spark and the Chain-of-Reasoning (and where, at inference, we only provide the Bit), leads to improvements in the overall quality of the hypotheses. Our evaluation employs automated metrics and LLM judge rankings for overall quality assessment. We show that by fine-tuning on our HypoGen dataset we improve the novelty, feasibility, and overall quality of the generated hypotheses. The HypoGen dataset is publicly available at huggingface.co/datasets/UniverseTBD/hypogen-dr1.

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Forward citations

Cited by 7 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. The Ideation-Execution Gap: Execution Outcomes of LLM-Generated versus Human Research Ideas

    cs.CL 2025-06 conditional novelty 8.0 of 10

    A randomized execution study with 43 experts shows that LLM-generated research ideas lose more of their appeal than human ideas when actually implemented, reversing part of their ideation-stage advantage.

  2. Style Wins, Substance Loses: A Diagnosis of LLM-as-Judge in Idea Generation

    cs.CL 2026-08 conditional novelty 6.0 of 10

    LLM judges of scientific ideas are measurably swayed by writing style; a style-detecting module reduces but does not remove the bias.

  3. HALO: Interactive Co-abductive Reasoning in Scientific Hypothesis Generation

    cs.HC 2026-07 conditional novelty 6.0 of 10

    HALO uses a three-stage co-abduction loop—clustering candidates by property improvement, distilling strategies, and synthesizing strategies—to help medicinal chemists produce more optimized and more diverse molecular ...

  4. DN-Hypo-Pipeline: An AI-Driven Workflow for Generating Hypotheses using Large Language Models and Scientific Explanations

    cs.AI 2026-06 unverdicted novelty 6.0 of 10

    Structuring LLM hypothesis generation around deductive-nomological explanation, causal processes, and universals is reported to beat direct prompting, with two generated ideas implemented as the CTAT and HALO algorithms.

  5. Interestingness First Classifiers

    cs.LG 2025-08 conditional novelty 6.0 of 10

    EUREKA uses LLM pairwise comparisons to rank features by interestingness and trains logistic regression on the top-ranked features, producing non-obvious yet above-chance classifiers on six tabular datasets.

  6. Are Large Language Models Reliable AI Scientists? Assessing Reverse-Engineering of Black-Box Systems

    cs.LG 2025-05 conditional novelty 6.0 of 10

    LLMs struggle to use passive observations for reverse engineering, but active intervention improves performance, largely through the process of generating queries rather than the data obtained.

  7. AI Scientists Fail Without Strong Implementation Capability

    cs.AI 2025-06 conditional novelty 4.0 of 10

    AI scientist systems can propose ideas but cannot reliably implement and verify experiments, making the implementation gap, not idea generation, the current bottleneck.

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