Paper Citation Record · LEDGER

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning

As of 19 August 2026, this Paper Citation Record lists 46 of 46 outbound references and 2 inbound Pith citation observations for arXiv:2505.04300.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2505.04300 v1

Coverage vector

measured 46 of 46 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-15T23:37:32.428811Z

measured 48 of 48 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-19T06:32:44.657259+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-11T04:20:19.873269Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: pith, observed 2026-08-10T21:50:43.982384Z

Reference resolution

46 of 46 outbound references displayed

verified exact1
verified fuzzy26
unresolved19
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 17a87a98-96dc-4966-9625-d37333c0c94a · outbound

This paper cites Ball, Judith A.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Ball, Judith A

Reference 1

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.165529Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d07e5953-fd26-49f4-a058-4a6ce508067e · outbound

This paper cites Structured sparsity-inducing norms through submodular functions.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Structured sparsity-inducing norms through submodular functions

Reference 2

Resolution: verified exact; local_arxiv, observed 2026-08-15T23:37:32.491816Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 798e9c6b-f8b1-4e1d-87e3-7179153a613f · outbound

This paper cites Bertram, M.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Bertram, M

Reference 3

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.150098Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b43aca21-1af8-428f-918e-ca3a6b50636d · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 4

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:33.137395Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 3185501e-3088-4e36-9d86-14cfe7b4b4fe · outbound

This paper cites Toy Models of Superposition.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Toy Models of Superposition

Reference 5

Resolution: unresolved; no resolver link, observed 2026-08-15T23:37:32.225006Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 2788311f-8c6a-472d-af82-9daa7101b71d · outbound

This paper cites Gang, S.and Liu, S.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Gang, S.and Liu, S

Reference 6

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.121474Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 70925279-441d-4f8c-88d1-7778513b5117 · outbound

This paper cites Gaudelet, N.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Gaudelet, N

Reference 7

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.106299Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 2161a943-c445-4db3-97c6-529eb7f53acf · outbound

This paper cites Pasnet: pathway-associatedsparsedeepneural network for prognosis prediction from high-throughput data.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Pasnet: pathway-associatedsparsedeepneural network for prognosis prediction from high-throughput data

Reference 8

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.090843Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 09e40828-129c-4d1d-9478-2e715aa97c1c · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 9

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:33.077221Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation a22fbe0c-8726-4748-ae6c-1487dad00b84 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 10

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:33.062688Z

Source-reported events for the cited work

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Observation a6129ae8-dc11-48fe-b35a-c1e338052b89 · outbound

This paper cites Hartman, A.M.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Hartman, A.M

Reference 11

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.047419Z

Source-reported events for the cited work

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Observation a9f226a5-05e0-4be0-a43c-508fcae475e6 · outbound

This paper cites Statistical Learning with Sparsity: The Lasso and Generalizations.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Statistical Learning with Sparsity: The Lasso and Generalizations

Reference 12

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.032061Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation e10edb5e-a747-41da-8ad8-e07ffa329872 · outbound

This paper cites Hoefler, D.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Hoefler, D

Reference 13

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:33.017812Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 0a2bccfd-178b-4773-8c91-450e013c4fb2 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 14

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:33.003941Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 767bf45b-a887-4a74-949d-930527e92a74 · outbound

This paper cites Jiang, C.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Jiang, C

Reference 15

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.989730Z

Source-reported events for the cited work

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Observation ab6fd0d8-6e5d-446d-9868-3c50a0a92e54 · outbound

This paper cites Kegg for taxonomy-based analysis of pathways and genomes.Nu- cleic Acids Research, 51(D1):D587–D592, 10 2023.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Kegg for taxonomy-based analysis of pathways and genomes.Nu- cleic Acids Research, 51(D1):D587–D592, 10 2023

Reference 16

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.975359Z

Source-reported events for the cited work

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Observation da38b1da-5f0f-4c76-8019-cfdf95b5949d · outbound

This paper cites Kim and H.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Kim and H

Reference 17

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.960594Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation e384a485-c1ea-4613-8bd2-5d2e3e081235 · outbound

This paper cites Kundu, M.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Kundu, M

Reference 18

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.944853Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 3b2df7d7-bd43-497a-bb26-96006657186d · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 19

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.929641Z

Source-reported events for the cited work

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Observation 31de044a-1b37-4095-b3d7-331ec34208b5 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 20

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.910216Z

Source-reported events for the cited work

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Observation b37fffc4-1ca6-440c-b5bb-91cea7f28f73 · outbound

This paper cites Liang, H.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Liang, H

Reference 21

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.893127Z

Source-reported events for the cited work

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Observation 3ea9fc2c-cd9c-424d-96ef-11be342f29dc · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 22

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.877971Z

Source-reported events for the cited work

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Observation c57e5ff4-e17e-4768-b81e-da9f87ff773a · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 23

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.862080Z

Source-reported events for the cited work

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Observation cc5a17b9-7f77-437c-bb91-f0972361b722 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 24

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.847308Z

Source-reported events for the cited work

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Observation 435c0e42-5087-4185-999c-06dda4763db7 · outbound

This paper cites A unified approach to interpreting model predictions.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning A unified approach to interpreting model predictions

Reference 25

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.831905Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation c1e0ba2f-d186-4952-9550-0edb558e12d1 · outbound

This paper cites Ma and J.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Ma and J

Reference 26

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.798969Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 2e16e4d2-b51d-4b4f-86d7-e5f35cac9a4e · outbound

This paper cites The reactome pathway knowledge- base 2024.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning The reactome pathway knowledge- base 2024

Reference 27

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.783645Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 830f0479-2558-4dc7-9da4-f2f2022ee4fc · outbound

This paper cites Biocarta.Biotech Software & Internet Report, 2004.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Biocarta.Biotech Software & Internet Report, 2004

Reference 28

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.768237Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 47741e4f-e9a7-4cd8-827b-2053c30a9075 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 29

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.753481Z

Source-reported events for the cited work

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Observation 912c1436-0e9d-415f-92e9-a3cfd26cf8ad · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 30

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.736678Z

Source-reported events for the cited work

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Observation 2f2f6195-b7fb-421e-bdc9-8cd20108571d · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 31

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.721316Z

Source-reported events for the cited work

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Observation d3fbf5ea-5010-42d2-95d0-78e01814845e · outbound

This paper cites Compositional sparsity of learnable functions.Bulletin of the American Mathematical Society, 2024.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Compositional sparsity of learnable functions.Bulletin of the American Mathematical Society, 2024

Reference 32

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.706984Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d3d693db-4680-4cff-96b7-2d50ccb1c981 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 33

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.692104Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation ddf1f2b4-65fc-4b6f-88e8-e08d9b95df8d · outbound

This paper cites Group sparse regularization for deep neural networks.Neurocomputing, 241:81–89, 2017.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Group sparse regularization for deep neural networks.Neurocomputing, 241:81–89, 2017

Reference 34

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.676756Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 5ce7b412-9078-44d7-b6c6-5c13f44008b8 · outbound

This paper cites Schaefer, Karthik Anthony, Stephen Krupa, Jonathan Buchoff, Michael Day, Tom Hannay, and Kenneth H.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Schaefer, Karthik Anthony, Stephen Krupa, Jonathan Buchoff, Michael Day, Tom Hannay, and Kenneth H

Reference 35

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.658383Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation e06f261f-3b63-440d-83bb-aa2aba2e3c07 · outbound

This paper cites Sharma and W.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Sharma and W

Reference 36

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.642977Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b0093472-df2b-432e-b3cc-da588ea1f2ba · outbound

This paper cites Learning structured sparsity in deep neural networks.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Learning structured sparsity in deep neural networks

Reference 37

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.627859Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d0c9a556-0a97-4e56-9c9e-e71ec59c92e2 · outbound

This paper cites Combined group and exclusive sparsity for deep neural networks.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Combined group and exclusive sparsity for deep neural networks

Reference 38

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.612689Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d8ff8132-9e46-4aea-939f-728a9172d589 · outbound

This paper cites Group variable selection via group sparse neural network.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Group variable selection via group sparse neural network

Reference 39

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.598269Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 1af07dcc-5665-490e-aa75-1021bd01c876 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 41

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.583958Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation d8425e90-ecda-4455-a627-4d8ea8b2d005 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 42

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.568856Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 9e56a31a-d4a7-42d6-88ec-bc97cf196a60 · outbound

This paper cites 25 Randomization Method The randomization operation can be performed through a uniform permutation of the con- nections while maintaining the above constraints.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning 25 Randomization Method The randomization operation can be performed through a uniform permutation of the con- nections while maintaining the above constraints

Reference 43

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.553910Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation b0b9a90b-be8c-4426-81de-1131bfe74355 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 44

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.538950Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 62a54322-6ee1-46b1-b634-af30781c944b · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 45

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.523148Z

Source-reported events for the cited work

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Observation 0525ee43-8a0c-46b4-a362-41fcbd6d2cce · outbound

This paper cites Variable.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Variable

Reference 46

Resolution: verified fuzzy; raw_fallback, observed 2026-08-15T23:37:32.507619Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 0700948e-cb20-4898-86e0-f64391040500 · outbound

This paper cites an unresolved cited work.

Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning Unresolved cited work

Reference 4774

Resolution: unresolved; raw_fallback, observed 2026-08-15T23:37:32.815038Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Pith citing papers

Observation deb917e2-07fd-46ff-85f1-5cd4bd1adac0 · inbound

bioMoR: Biology-Guided Mixture-of-Recursions for Effective Genomic Learning cites this paper.

bioMoR: Biology-Guided Mixture-of-Recursions for Effective Genomic Learning Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning

Reference 66

Resolution: metadata mismatch; local_arxiv, observed 2026-08-10T21:50:43.989201Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.

Observation 3c04ce36-4199-4dad-9931-9098ceef297a · inbound

bioMoR: Biology-Guided Mixture-of-Recursions for Effective Genomic Learning cites this paper.

bioMoR: Biology-Guided Mixture-of-Recursions for Effective Genomic Learning Sparsity is All You Need: Rethinking Biological Pathway-Informed Approaches in Deep Learning

Reference 66

Resolution: unresolved; no resolver link, observed 2026-08-11T04:20:19.873269Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.