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Paper Citation Record · LEDGER

Improving Protein Sequence Design through Designability Preference Optimization

As of 8 August 2026, this Paper Citation Record lists 47 of 47 outbound references and 1 inbound Pith citation observation for arXiv:2506.00297.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2506.00297 v1

Coverage vector

measured 47 of 47 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-07T12:12:14.333339Z

measured 48 of 48 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00

measured 1 of 1 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-02T09:46:04.299810Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

47 of 47 outbound references displayed

  • verified exact0
  • verified fuzzy37
  • unresolved10
  • parse uncertain0
  • malformed identifier0
  • metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

Observation 2af98852-9dd0-4ac9-9c28-b4a53e00b860 · outbound

This paper cites Boyken, and David Baker.

Improving Protein Sequence Design through Designability Preference Optimization Boyken, and David Baker

Reference 1

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.470468Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 8d904d26-b77f-4c10-aa52-ceab52555064 · outbound

This paper cites Watson, David Juergens, Nathaniel R.

Improving Protein Sequence Design through Designability Preference Optimization Watson, David Juergens, Nathaniel R

Reference 2

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.314937Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:07.553580Z digest=sha256:9a7a5b0a46d482c5789741d889a480ff66fd44af889a4912e69029394553a1c1

Observation a9a4082f-7a6b-4c37-a596-e9f50e19118f · outbound

This paper cites Mackessy, Stefanie K.

Improving Protein Sequence Design through Designability Preference Optimization Mackessy, Stefanie K

Reference 3

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:22.132229Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:07.781176Z digest=sha256:e0f11516c60f4486e060df1344f09cf3102e359fc0455c6b4f72176c13ca4cfc

Observation 0d6e696c-87ab-429b-b79a-805adb881a63 · outbound

This paper cites Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J.

Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.979880Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:07.931756Z digest=sha256:0aa01e785bf373cc3d04b4e5259db18dbc69ab139c7062f165e5e15d4ea568c2

Observation f8ef5b18-ce88-4eae-8f0b-046824bf33ec · outbound

This paper cites Dauparas, I.

Improving Protein Sequence Design through Designability Preference Optimization Dauparas, I

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.829624Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.037654Z digest=sha256:f996b8e3c5ac54d8301751fff283297c634c75eada9bdd13156e748de9609483

Observation b278819a-fceb-4727-81ee-212a26949612 · outbound

This paper cites Generative Models for Graph-Based Protein Design.

Improving Protein Sequence Design through Designability Preference Optimization Generative Models for Graph-Based Protein Design

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.616535Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.175173Z digest=sha256:aa05fe3ff93c1b01a848a8a3d96ab5c4e5fb430afe458f2d950c805aae207bd5

Observation a51273d9-e6a7-4ac0-98a3-58d26e415223 · outbound

This paper cites Learning from Protein Structure with Geometric Vector Perceptrons.

Improving Protein Sequence Design through Designability Preference Optimization Learning from Protein Structure with Geometric Vector Perceptrons

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.445057Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.282188Z digest=sha256:6b80b8f9aca9e850f89b7dc3cdcc144822e381e89fa3f0c5fa42acc61e8892a6

Observation 2d6a61ec-fc6b-4da4-a248-d8b91dc018ae · outbound

This paper cites Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022.

Improving Protein Sequence Design through Designability Preference Optimization Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.217687Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.362935Z digest=sha256:2cc43be254a684991e86fd278eb3b0f82b5aca4e5dbb8c9db204a74eaa53fbb5

Observation e2e86d6c-32ee-4184-b709-ee4ba3b1ada8 · outbound

This paper cites Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022.

Improving Protein Sequence Design through Designability Preference Optimization Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:21.070739Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.463298Z digest=sha256:c90fedf2f3c9def9ab04dc5eb36e069e1613968a17f741ff2cd364712a39ddb8

Observation 64aa0f28-23b3-4699-9f13-2140b9e63aaf · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 10

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.971485Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation df37c098-33e2-4787-ad4b-7eb202472eae · outbound

This paper cites Mathews, Carla P.

Improving Protein Sequence Design through Designability Preference Optimization Mathews, Carla P

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.784350Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.687842Z digest=sha256:afadfcaf495435dc48aa278dc546eb1138189d179f592dc237f96d943ffa8ad6

Observation 7794d9b9-9b41-4d28-bb48-9dcec654c7a2 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 12

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.604167Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.785633Z digest=sha256:2067ce2ac78ae85f777464e2054c02526a345571ac16698399e90290fbd2b76c

Observation d796f56d-8a1c-47d8-a240-ff942a4c2489 · outbound

This paper cites ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023.

Improving Protein Sequence Design through Designability Preference Optimization ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023

Reference 13

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.411220Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:08.981341Z digest=sha256:a2a303b4993309f9eb1c4a79fb31e7fee46a7eb8733a6ddf4d2b501bf336c422

Observation d2b07b4d-ee82-4e02-a169-71601157e8b7 · outbound

This paper cites Structure- informed Language Models Are Protein Designers.

Improving Protein Sequence Design through Designability Preference Optimization Structure- informed Language Models Are Protein Designers

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:20.194159Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:09.166436Z digest=sha256:73e66a10c71b326e8dd3027becf9cb75449a0527ec6d3eb8d01ce9e9f8cbf91b

Observation f540e3be-e341-42f6-af36-1577547af512 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 15

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:20.029022Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:09.313410Z digest=sha256:e1a19fae70b665abcec9a389d1ef21cfd92014055e6857f1225822caf548dd2f

Observation b61ce0f0-3e92-42be-9acd-8ec51a33f714 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 16

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:19.835745Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:09.463803Z digest=sha256:ab4f0b9496cdacc465dbe384679204bfb423b408971970a14f09435fa385ce06

Observation 845a05a9-76e5-4317-a454-6b3e8d5b1be5 · outbound

This paper cites PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020.

Improving Protein Sequence Design through Designability Preference Optimization PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020

Reference 17

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.647308Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 3f2cfc53-ba5f-4c6a-b2b1-30bc0c36ea6c · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 18

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:19.471632Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:09.820582Z digest=sha256:ce2d7515ec6985c40e6cea26653057f23d2412202e9d88697e41feaa8096a7dd

Observation 34c1f102-df3a-4f80-9188-fabbd9e0c52d · outbound

This paper cites ProteinBench: A Holistic Evaluation of Protein Foundation Models.

Improving Protein Sequence Design through Designability Preference Optimization ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 19

Resolution
unresolved
no resolver link, observed 2026-08-07T12:12:09.974745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:12:09.974745Z digest=sha256:345c179312b5f5ae86e5b78425e80b99c69aa2bdc375516b6e9e50f1d920c1d2

Observation c1448df6-5d28-4510-ba04-9c9259ac8b6b · outbound

This paper cites Christiano, Jan Leike, Tom B.

Improving Protein Sequence Design through Designability Preference Optimization Christiano, Jan Leike, Tom B

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.265635Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:10.130405Z digest=sha256:3fee5d3113398d1bae35eb6f80165f9989b631462d219dcd673533b74529b389

Observation 3d566225-5afd-4df3-8d11-c6b25a5e4479 · outbound

This paper cites https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/.

Improving Protein Sequence Design through Designability Preference Optimization https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:19.083292Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:10.298914Z digest=sha256:74e36c146d1fee4e6f59b66fd7dcaa5dfd0f0266dbce00ffd94308b76c20afa8

Observation b3d94b92-dc9c-46ad-b59d-55f741806825 · outbound

This paper cites DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025.

Improving Protein Sequence Design through Designability Preference Optimization DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.920335Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation f83dcc5d-4f4e-47b3-9b44-ab2db36b73d0 · outbound

This paper cites Ab initio characterization of protein molecular dynamics with AI2BMD.

Improving Protein Sequence Design through Designability Preference Optimization Ab initio characterization of protein molecular dynamics with AI2BMD

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.851862Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 74e9f29f-9f9f-45f9-aa4a-7379c92b715c · outbound

This paper cites Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W.

Improving Protein Sequence Design through Designability Preference Optimization Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.659693Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:10.762169Z digest=sha256:d924aecfb1ef9674ac0f1d337d8d2a17ba62ff2016ce34562b82d374a83b6105

Observation ce64660c-dca7-4d12-be18-4484e1311fe3 · outbound

This paper cites Kinch, R.

Improving Protein Sequence Design through Designability Preference Optimization Kinch, R

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.468321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

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Observation 46b073f5-423c-47af-92a6-0e51afd605ff · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 26

Resolution
unresolved
no resolver link, observed 2026-08-07T12:12:11.014273Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-07T12:12:11.014273Z digest=sha256:7afc2b7c28354c7fc2946dbbc04387faccb861106dae0b50a07ee481559cf545

Observation b2e9fe4e-baa3-4dd8-bb59-4e9abbbc1400 · outbound

This paper cites Manning, Stefano Ermon, and Chelsea Finn.

Improving Protein Sequence Design through Designability Preference Optimization Manning, Stefano Ermon, and Chelsea Finn

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.306389Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:11.165970Z digest=sha256:fbb1ec3c8fd2ed444372acc3980c7e2141e856e02c5613ab87f67342390a9e0c

Observation 804b6a88-0724-43f8-8d1f-4ab45718be33 · outbound

This paper cites Gomez, Łukasz Kaiser, and Illia Polosukhin.

Improving Protein Sequence Design through Designability Preference Optimization Gomez, Łukasz Kaiser, and Illia Polosukhin

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:18.136501Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:11.356050Z digest=sha256:62f16cc0e9f0e8d82ab9b9b24d78acdf54fa033848655b7d39c05d2f164a8bd2

Observation f99cec6a-3cb1-44be-a9ae-2be9275f2f4e · outbound

This paper cites Learning inverse folding from millions of predicted structures.

Improving Protein Sequence Design through Designability Preference Optimization Learning inverse folding from millions of predicted structures

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.943807Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:11.539350Z digest=sha256:9e6374b1e5d4e08ba06761546148b6656a4a278eedcbde5684eefc1ebb8dbc90

Observation eee1b8b8-fbe8-47de-b6d5-68cb12069f3d · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 30

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:17.718407Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:11.692726Z digest=sha256:5849da67495d053378f198e66078702123b18bc9ed0fbf58d3e33d16eb390a0c

Observation b2918872-e99b-4c77-8689-59d44db28ae1 · outbound

This paper cites Nakou, Sebastian Lindner, Gavin Ayres, Lesley S.

Improving Protein Sequence Design through Designability Preference Optimization Nakou, Sebastian Lindner, Gavin Ayres, Lesley S

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.545074Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:11.888140Z digest=sha256:22a32817730c54688c8a8b985a232148e21fec84dc7dfa7e9f539767330a3447

Observation c0a7b5da-b725-4842-b101-12f5e12fb116 · outbound

This paper cites Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024.

Improving Protein Sequence Design through Designability Preference Optimization Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.321653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.064793Z digest=sha256:d178dfab4604496415ff1753bcb743cdd762a7f253356287807a42cf0996ea75

Observation 05b9a618-875e-4fc0-96c7-b19cd467ef0b · outbound

This paper cites Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025.

Improving Protein Sequence Design through Designability Preference Optimization Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:17.151456Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.217191Z digest=sha256:0d1f6772a3269b27d30c3eb2624e595083c8151343661f5dc6be2cfb11c76d89

Observation 3d1291ec-e201-4752-8828-e1f79dc13430 · outbound

This paper cites A General Theoretical Paradigm to Understand Learning from Human Preferences.

Improving Protein Sequence Design through Designability Preference Optimization A General Theoretical Paradigm to Understand Learning from Human Preferences

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.963653Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.373676Z digest=sha256:c8421756f9fba08f636dabe7c7168729063e25322ba5000c253e13d15ef7b012

Observation da771f2d-8b0a-4ba6-a67a-3e474c2d0448 · outbound

This paper cites Liu, and Xuanhui Wang.

Improving Protein Sequence Design through Designability Preference Optimization Liu, and Xuanhui Wang

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.746479Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.524103Z digest=sha256:abc7b9834089c95e3eff8e482d6bd1630561206287857db63e4d38eb41c52dff

Observation 000427cf-eae3-4b98-a095-893f0e343dbe · outbound

This paper cites SimPO: Simple Preference Optimization with a Reference-Free Reward.

Improving Protein Sequence Design through Designability Preference Optimization SimPO: Simple Preference Optimization with a Reference-Free Reward

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.609037Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.690730Z digest=sha256:5d9a8b5fb660c2579aa59839f4a4da8bf3aa4d722b828417368291e52153d235

Observation bb228053-06d5-4e03-81ad-8d498a325946 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 37

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:16.378423Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.824852Z digest=sha256:00549065dcc282e14533ee84869aa1edee746a9276fc65fa1ce2d82555eceed7

Observation b92069dd-0cb0-4314-bbe1-8e5100a3bf59 · outbound

This paper cites The Llama 3 Herd of Models, November 2024.

Improving Protein Sequence Design through Designability Preference Optimization The Llama 3 Herd of Models, November 2024

Reference 38

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.198763Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:12.971901Z digest=sha256:a8de50aa6617ecd9cea517b086f068fd866be945bbe83f8e805607cbb1bbeed3

Observation 50185078-b27c-4bc9-9743-3e1b3e693585 · outbound

This paper cites Berman, John Westbrook, Zukang Feng, Gary Gilliland, T.

Improving Protein Sequence Design through Designability Preference Optimization Berman, John Westbrook, Zukang Feng, Gary Gilliland, T

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:16.036068Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:13.139713Z digest=sha256:9a3fcd8f39864cf30aa0c994fab9866141b48d903eb6d74c5c88f4592c33eec3

Observation d5d5940f-8e84-4629-aaf0-f8ea471e7464 · outbound

This paper cites Ballard, Joshua Bambrick, Sebastian W.

Improving Protein Sequence Design through Designability Preference Optimization Ballard, Joshua Bambrick, Sebastian W

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.808729Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:13.301543Z digest=sha256:70167e7e0f5eb78cc199328dfcb3014b844cc29e03f2d79daaa5cb48a734b3de

Observation 2b3dd517-8cfe-422b-90cc-320a0eff7f60 · outbound

This paper cites an unresolved cited work.

Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work

Reference 41

Resolution
unresolved
raw_fallback, observed 2026-08-07T12:12:15.622282Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:13.468454Z digest=sha256:e5a3a59958747b6abba88ade9f5413aa175d11be0001a7ebde7f541842d14865

Observation 96f9a0fb-986b-431a-9939-963d48408a0e · outbound

This paper cites Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S.

Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.423051Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:13.640287Z digest=sha256:930665274604456a2ecc12e730a8d2bc038de177e65871a8a5f0134adc29ac5e

Observation ed509beb-2032-4162-8b9b-62704cf3adc4 · outbound

This paper cites Provably Robust DPO: Aligning Language Models with Noisy Feedback.

Improving Protein Sequence Design through Designability Preference Optimization Provably Robust DPO: Aligning Language Models with Noisy Feedback

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.237489Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:13.774395Z digest=sha256:a1edcdd407da8f2f4452552b2baced172739b3d7dd3d5cef20714231dc737ed6

Observation c9cd7396-0fb0-4ea2-a89e-bf9a7185745f · outbound

This paper cites Liu, and Jialu Liu.

Improving Protein Sequence Design through Designability Preference Optimization Liu, and Jialu Liu

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:15.058823Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:13.899877Z digest=sha256:4af64fccc763a267e6a85d99f0a9eddb48e4fb8bfdfb38bc18752f3a76a6e966

Observation 8e71d8e0-ff20-4c12-99e2-54940b8b4b52 · outbound

This paper cites Model Alignment as Prospect Theoretic Optimization.

Improving Protein Sequence Design through Designability Preference Optimization Model Alignment as Prospect Theoretic Optimization

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.894163Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:14.065811Z digest=sha256:677354a53bbc15cdbf824385774773874474394f2189537043f8888aeca66a32

Observation a3fc7719-a9fa-4705-97ce-588deb2af574 · outbound

This paper cites Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024.

Improving Protein Sequence Design through Designability Preference Optimization Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.735242Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:14.225058Z digest=sha256:b6548f1fc29f3010cda24ddf500d08f6e311d2b1c4ab6031054d39fef6c5d295

Observation e136365a-18d0-4fa0-8fbe-d2eb9d22e159 · outbound

This paper cites designability.

Improving Protein Sequence Design through Designability Preference Optimization designability

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-07T12:12:14.539902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.

source=pdf_text observed=2026-08-07T12:12:14.333339Z digest=sha256:330d9063c561a45cdee52b110574a85590bd9f34e3ebdcd4ad21a2ce690fc3ef

Pith citing papers

Observation 8f2eeb86-c8d2-4625-9aaa-101d7f166783 · inbound

Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision cites this paper.

Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision Improving Protein Sequence Design through Designability Preference Optimization

Reference 21

Resolution
unresolved
no resolver link, observed 2026-08-02T09:46:04.299810Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=arxiv_source observed=2026-08-02T09:46:04.299810Z digest=sha256:8dcf9171422eb94ccc372ce3a390328dc55c0caf88f82f06252536079019ffe3