Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-07T12:12:14.333339Z
Paper Citation Record · LEDGER
As of 8 August 2026, this Paper Citation Record lists 47 of 47 outbound references and 1 inbound Pith citation observation for arXiv:2506.00297.
A citation records a reference. It does not transfer a finding from one paper to another.
Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-07T12:12:14.333339Z
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-07T06:34:17.273281+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links, observed 2026-08-02T09:46:04.299810Z
A source-named dated measurement, never combined with another source.
Source: cited_works
47 of 47 outbound references displayed
External citation measurements
No source-named external measurement is stored.
Observation 2af98852-9dd0-4ac9-9c28-b4a53e00b860 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Boyken, and David Baker
Reference 1
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 8d904d26-b77f-4c10-aa52-ceab52555064 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Watson, David Juergens, Nathaniel R
Reference 2
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation a9a4082f-7a6b-4c37-a596-e9f50e19118f · outbound
Improving Protein Sequence Design through Designability Preference Optimization Mackessy, Stefanie K
Reference 3
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 0d6e696c-87ab-429b-b79a-805adb881a63 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Woody Ahern, Indrek Kalvet, Nikita Hanikel, Saman Salike, Samuel J
Reference 4
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation f8ef5b18-ce88-4eae-8f0b-046824bf33ec · outbound
Improving Protein Sequence Design through Designability Preference Optimization Dauparas, I
Reference 5
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation b278819a-fceb-4727-81ee-212a26949612 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Generative Models for Graph-Based Protein Design
Reference 6
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation a51273d9-e6a7-4ac0-98a3-58d26e415223 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Learning from Protein Structure with Geometric Vector Perceptrons
Reference 7
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 2d6a61ec-fc6b-4da4-a248-d8b91dc018ae · outbound
Improving Protein Sequence Design through Designability Preference Optimization Rotamer-free protein sequence design based on deep learning and self-consistency.Nature Computational Science, 2(7):451–462, July 2022
Reference 8
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation e2e86d6c-32ee-4184-b709-ee4ba3b1ada8 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Protein sequence design by deep learning.Nature Computational Science, 2(7):416– 417, July 2022
Reference 9
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 64aa0f28-23b3-4699-9f13-2140b9e63aaf · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 10
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation df37c098-33e2-4787-ad4b-7eb202472eae · outbound
Improving Protein Sequence Design through Designability Preference Optimization Mathews, Carla P
Reference 11
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 7794d9b9-9b41-4d28-bb48-9dcec654c7a2 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 12
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation d796f56d-8a1c-47d8-a240-ff942a4c2489 · outbound
Improving Protein Sequence Design through Designability Preference Optimization ProRefiner: An entropy-based refining strategy for inverse protein folding with global graph attention.Nature Communications, 14(1):7434, November 2023
Reference 13
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation d2b07b4d-ee82-4e02-a169-71601157e8b7 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Structure- informed Language Models Are Protein Designers
Reference 14
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation f540e3be-e341-42f6-af36-1577547af512 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 15
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation b61ce0f0-3e92-42be-9acd-8ec51a33f714 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 16
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 845a05a9-76e5-4317-a454-6b3e8d5b1be5 · outbound
Improving Protein Sequence Design through Designability Preference Optimization PRosettaC: Rosetta Based Modeling of PROTAC Mediated Ternary Complexes.Journal of Chemical Information and Modeling, 60(10):4894–4903, October 2020
Reference 17
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 3f2cfc53-ba5f-4c6a-b2b1-30bc0c36ea6c · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 18
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 34c1f102-df3a-4f80-9188-fabbd9e0c52d · outbound
Improving Protein Sequence Design through Designability Preference Optimization ProteinBench: A Holistic Evaluation of Protein Foundation Models
Reference 19
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation c1448df6-5d28-4510-ba04-9c9259ac8b6b · outbound
Improving Protein Sequence Design through Designability Preference Optimization Christiano, Jan Leike, Tom B
Reference 20
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 3d566225-5afd-4df3-8d11-c6b25a5e4479 · outbound
Improving Protein Sequence Design through Designability Preference Optimization https://ai.meta.com/blog/llama-3-2-connect-2024-vision-edge-mobile-devices/
Reference 21
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation b3d94b92-dc9c-46ad-b59d-55f741806825 · outbound
Improving Protein Sequence Design through Designability Preference Optimization DeepSeek-R1: Incentivizing Reasoning Capability in LLMs via Reinforcement Learning, January 2025
Reference 22
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation f83dcc5d-4f4e-47b3-9b44-ab2db36b73d0 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Ab initio characterization of protein molecular dynamics with AI2BMD
Reference 23
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 74e9f29f-9f9f-45f9-aa4a-7379c92b715c · outbound
Improving Protein Sequence Design through Designability Preference Optimization Senior, Richard Evans, John Jumper, James Kirkpatrick, Laurent Sifre, Tim Green, Chongli Qin, Augustin Žídek, Alexander W
Reference 24
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation ce64660c-dca7-4d12-be18-4484e1311fe3 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Kinch, R
Reference 25
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 46b073f5-423c-47af-92a6-0e51afd605ff · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 26
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation b2e9fe4e-baa3-4dd8-bb59-4e9abbbc1400 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Manning, Stefano Ermon, and Chelsea Finn
Reference 27
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 804b6a88-0724-43f8-8d1f-4ab45718be33 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Gomez, Łukasz Kaiser, and Illia Polosukhin
Reference 28
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation f99cec6a-3cb1-44be-a9ae-2be9275f2f4e · outbound
Improving Protein Sequence Design through Designability Preference Optimization Learning inverse folding from millions of predicted structures
Reference 29
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation eee1b8b8-fbe8-47de-b6d5-68cb12069f3d · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 30
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation b2918872-e99b-4c77-8689-59d44db28ae1 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Nakou, Sebastian Lindner, Gavin Ayres, Lesley S
Reference 31
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation c0a7b5da-b725-4842-b101-12f5e12fb116 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Accurate and robust protein sequence design with CarbonDesign.Nature Machine Intelligence, 6(5):536–547, May 2024
Reference 32
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 05b9a618-875e-4fc0-96c7-b19cd467ef0b · outbound
Improving Protein Sequence Design through Designability Preference Optimization Atomic context-conditioned protein sequence design using LigandMPNN.Nature Methods, 22(4):717–723, April 2025
Reference 33
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 3d1291ec-e201-4752-8828-e1f79dc13430 · outbound
Improving Protein Sequence Design through Designability Preference Optimization A General Theoretical Paradigm to Understand Learning from Human Preferences
Reference 34
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation da771f2d-8b0a-4ba6-a67a-3e474c2d0448 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Liu, and Xuanhui Wang
Reference 35
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 000427cf-eae3-4b98-a095-893f0e343dbe · outbound
Improving Protein Sequence Design through Designability Preference Optimization SimPO: Simple Preference Optimization with a Reference-Free Reward
Reference 36
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation bb228053-06d5-4e03-81ad-8d498a325946 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 37
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation b92069dd-0cb0-4314-bbe1-8e5100a3bf59 · outbound
Improving Protein Sequence Design through Designability Preference Optimization The Llama 3 Herd of Models, November 2024
Reference 38
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 50185078-b27c-4bc9-9743-3e1b3e693585 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Berman, John Westbrook, Zukang Feng, Gary Gilliland, T
Reference 39
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation d5d5940f-8e84-4629-aaf0-f8ea471e7464 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Ballard, Joshua Bambrick, Sebastian W
Reference 40
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 2b3dd517-8cfe-422b-90cc-320a0eff7f60 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Unresolved cited work
Reference 41
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 96f9a0fb-986b-431a-9939-963d48408a0e · outbound
Improving Protein Sequence Design through Designability Preference Optimization Woodbury, Donghyo Kim, Indrek Kalvet, Yakov Kipnis, Brian Coventry, Han Raut Altae-Tran, Magnus Bauer, Regina Barzilay, Tommi S
Reference 42
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation ed509beb-2032-4162-8b9b-62704cf3adc4 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Provably Robust DPO: Aligning Language Models with Noisy Feedback
Reference 43
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation c9cd7396-0fb0-4ea2-a89e-bf9a7185745f · outbound
Improving Protein Sequence Design through Designability Preference Optimization Liu, and Jialu Liu
Reference 44
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 8e71d8e0-ff20-4c12-99e2-54940b8b4b52 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Model Alignment as Prospect Theoretic Optimization
Reference 45
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation a3fc7719-a9fa-4705-97ce-588deb2af574 · outbound
Improving Protein Sequence Design through Designability Preference Optimization Noise Contrastive Alignment of Language Models with Explicit Rewards.NeurIPS, 37:117784–117812, December 2024
Reference 46
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation e136365a-18d0-4fa0-8fbe-d2eb9d22e159 · outbound
Improving Protein Sequence Design through Designability Preference Optimization designability
Reference 47
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-07T06:34:17.273281+00:00.
Observation 8f2eeb86-c8d2-4625-9aaa-101d7f166783 · inbound
Preference-based Antibody Expression Ranking: Scaling with Large-scale Weak Supervision Improving Protein Sequence Design through Designability Preference Optimization
Reference 21
Source-reported events for the cited work
Unavailable: canonical work link unavailable.