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arxiv: 2607.00794 · v1 · pith:HCL3KSJQnew · submitted 2026-07-01 · 💻 cs.LG · eess.SP

Which Metric Reflects the Spelling Rate Accuracy in Event-Related Potential-Based Brain-Computer Interfaces?

Pith reviewed 2026-07-02 16:04 UTC · model grok-4.3

classification 💻 cs.LG eess.SP
keywords ERP BCIspelling rateperformance metricsclass imbalanceROC AUCBrier scoreMatthews correlation coefficientinformation transfer rate
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The pith

Brier score, Matthews correlation coefficient, and imbalance-aware metrics best reflect spelling rate in ERP-based brain-computer interfaces.

A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.

The paper investigates which of 13 common performance metrics align most closely with spelling rate, the practical measure of success in ERP-based BCIs that directly informs information transfer rate. Standard accuracy and loss are shown to be less reliable because ERP data is heavily imbalanced between target and non-target classes. Across a private LARESI dataset and the public OpenBMI dataset, the Brier score, Matthews correlation coefficient, ROC AUC, PR AUC, average precision, and partial AUC track spelling rate more faithfully, especially as trial repetitions increase. The work therefore recommends that ERP-BCI studies report these metrics to give a clearer picture of real user performance.

Core claim

Results from the LARESI ERP dataset and the OpenBMI ERP dataset show that spelling rate correlates most strongly with the Brier score, Matthews Correlation Coefficient, and the class-imbalance-aware metrics ROC AUC, PR AUC, Average Precision, and partial AUC. These metrics outperform accuracy and loss when trial repetition is varied, because they better capture the binary classification task of detecting event-related potentials amid dominant non-target trials.

What carries the argument

Correlation analysis of spelling rate against 13 metrics, evaluated at different numbers of trial repetitions on two ERP datasets.

If this is right

  • ERP-BCI papers should report Brier score and Matthews correlation coefficient alongside or instead of accuracy.
  • Imbalance-aware metrics give a more faithful estimate of how many characters a user can spell correctly per minute.
  • Model selection and hyper-parameter tuning in ERP-BCI should prioritize these metrics when spelling rate is the ultimate goal.
  • Information transfer rate calculations will be more reliable when based on the recommended metrics rather than raw accuracy.

Where Pith is reading between the lines

These are editorial extensions of the paper, not claims the author makes directly.

  • Adopting these metrics could change which models are considered state-of-the-art in the ERP-BCI literature.
  • Online, closed-loop BCI experiments might reveal different correlation patterns than the offline analyses performed here.
  • The same metric comparison could be applied to other imbalanced BCI paradigms such as motor imagery or steady-state visual evoked potentials.

Load-bearing premise

The correlations found between spelling rate and the recommended metrics in these two datasets will hold for other users, paradigms, and hardware.

What would settle it

A new ERP-BCI dataset in which accuracy or cross-entropy loss shows higher correlation with spelling rate than the Brier score or ROC AUC across multiple repetition counts.

Figures

Figures reproduced from arXiv: 2607.00794 by Naoual El Djouher Mebtouche, Okba Bekhelifi.

Figure 1
Figure 1. Figure 1: Pearson’s r correlation coefficient values for OpenBMI ERP per repetition sequence. Absolute values are plotted. Circles and square represent EEGTCNet session 1 and session 2 respectively. LogReg refers to Logistic Regression and is represented by triangle and diamond for session 1 and session 2 respectively [PITH_FULL_IMAGE:figures/full_fig_p005_1.png] view at source ↗
Figure 2
Figure 2. Figure 2: Kendall’s τ correlation coefficient values for OpenBMI ERP per repetition sequence. Absolute values are plotted. Absolute values are plotted, Circles and square represent EEGTCNet session 1 and session 2 respectively. LogReg refers to Logistic Regression and is represented by triangle and diamond for session 1 and session 2 respectively. 5 [PITH_FULL_IMAGE:figures/full_fig_p005_2.png] view at source ↗
read the original abstract

For predictive models, the often-reported performance metrics are the loss and accuracy. In synchronous Brain- Computer Interface (BCI) systems, these metrics are informative for most BCI paradigms; however, for Event-Related Potential (ERP) applications the spelling rate, which measures the number of characters correctly selected is more important as it influences the estimation of information transfer rate (ITR) and any related metric measuring spelling performance. Moreover, ERP-based BCIs hold imbalanced data class distributions, which require reporting metrics that can handle the imbalance, such as the area under the receiver operating characteristic curve (ROC AUC). In this work, we study the correlation of the spelling rate with 13 metrics to identify which among them best reflect user spelling performance and how they are affected by trial repetition. The Results of two datasets (a private LARESI ERP dataset and the public OpenBMI ERP dataset) favor the Brier score, Matthews Correlation Coefficient (MCC), and the metrics that account for class imbalance in binary classification: ROC AUC, area under the Precision-Recall curve (PR AUC), Average Precision (AP), and partial AUC (pAUC). These findings encourage researchers and practitioners to report those metrics in ERP-based BCI experiments.

Editorial analysis

A structured set of objections, weighed in public.

Desk editor's note, referee report, simulated authors' rebuttal, and a circularity audit. Tearing a paper down is the easy half of reading it; the pith above is the substance, this is the friction.

Referee Report

2 major / 2 minor

Summary. The paper examines correlations between spelling rate (as ground-truth performance) and 13 classification metrics across two ERP-BCI datasets (private LARESI and public OpenBMI). It reports that Brier score, MCC, ROC AUC, PR AUC, AP, and pAUC show the strongest correlations and best handle class imbalance, and therefore encourages researchers to report these metrics in ERP-based BCI experiments.

Significance. If the reported correlations prove robust, the study supplies concrete empirical guidance for metric choice in imbalanced ERP classification, where spelling rate directly affects ITR estimates. The inclusion of a public dataset alongside a private one is a positive step toward reproducibility.

major comments (2)
  1. [Results] Results section: the recommendation to report Brier score, MCC, ROC AUC, PR AUC, AP, and pAUC in ERP-BCI experiments rests on correlations observed in only the LARESI and OpenBMI collections; no cross-dataset validation, meta-analysis, or sensitivity check to paradigm/hardware variation is described that would support generalizing the ranking beyond these two datasets.
  2. [Discussion] Discussion/Conclusion: spelling rate is adopted as the sole reference without independent justification or comparison to alternative ground-truth measures (e.g., ITR variants or user-reported usability), which is load-bearing for the claim that the favored metrics 'best reflect' spelling performance.
minor comments (2)
  1. [Abstract] Abstract and Methods: the manuscript provides no numerical values for subject counts, correlation coefficients, p-values, or multiple-comparison corrections, making it impossible to judge the statistical support for the metric ranking.
  2. [Title] Notation: the distinction between 'spelling rate accuracy' in the title and the spelling-rate quantity used in the correlations should be clarified to avoid reader confusion.

Simulated Author's Rebuttal

2 responses · 0 unresolved

We thank the referee for the constructive comments on our manuscript. We address each major comment below with honest responses based on the scope and content of the study. We agree that certain limitations should be more explicitly discussed and will revise the manuscript accordingly.

read point-by-point responses
  1. Referee: [Results] Results section: the recommendation to report Brier score, MCC, ROC AUC, PR AUC, AP, and pAUC in ERP-BCI experiments rests on correlations observed in only the LARESI and OpenBMI collections; no cross-dataset validation, meta-analysis, or sensitivity check to paradigm/hardware variation is described that would support generalizing the ranking beyond these two datasets.

    Authors: We thank the referee for highlighting this point. The study is an empirical correlation analysis performed separately on each of the two datasets (private LARESI and public OpenBMI) to identify which metrics track spelling rate within those collections. While the top-performing metrics were consistent across both, we did not perform cross-dataset validation, meta-analysis, or explicit sensitivity checks to additional paradigm or hardware variations, as that was outside the stated scope. We agree this limits claims of broad generalizability. In the revised manuscript we will expand the Discussion to explicitly state this limitation and recommend future work involving additional datasets and sensitivity analyses. revision: partial

  2. Referee: [Discussion] Discussion/Conclusion: spelling rate is adopted as the sole reference without independent justification or comparison to alternative ground-truth measures (e.g., ITR variants or user-reported usability), which is load-bearing for the claim that the favored metrics 'best reflect' spelling performance.

    Authors: Spelling rate was selected as the reference because the paper focuses on synchronous ERP spelling BCIs, where the number of correctly selected characters is the direct performance outcome that determines ITR and practical utility (as noted in the Abstract and Introduction). This choice aligns with standard practice in the ERP-BCI spelling literature. We did not include comparisons to ITR variants or usability measures, as the goal was to correlate classification metrics against this primary spelling outcome rather than to validate alternative ground truths. We acknowledge that adding explicit justification would strengthen the manuscript. In revision we will insert a short paragraph in the Discussion providing references to prior BCI work that motivates spelling rate as the key reference and noting that exploration of alternatives lies beyond the current scope. revision: yes

Circularity Check

0 steps flagged

Purely empirical correlation study with no derivation chain

full rationale

The paper reports observed correlations between spelling rate and 13 classification metrics on two fixed datasets (LARESI and OpenBMI). No equations, derivations, fitted parameters renamed as predictions, or self-citation chains appear in the provided text. The central claim is an empirical ranking of metrics by correlation strength; it does not reduce to its inputs by construction. This is the expected non-finding for a dataset-driven empirical study.

Axiom & Free-Parameter Ledger

0 free parameters · 1 axioms · 0 invented entities

Review based on abstract only. No free parameters or invented entities are introduced. The key domain assumption is that spelling rate is the performance quantity that matters most because it drives ITR.

axioms (1)
  • domain assumption Spelling rate is the most important performance measure in ERP-BCI because it influences ITR estimation.
    Explicitly stated in the abstract as the reason standard loss and accuracy are insufficient.

pith-pipeline@v0.9.1-grok · 5758 in / 1219 out tokens · 29092 ms · 2026-07-02T16:04:49.432082+00:00 · methodology

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Reference graph

Works this paper leans on

34 extracted references · 34 canonical work pages

  1. [1]

    An accurate and rapidly calibrating speech neuro- prosthesis,

    N. S. Cardet al., “An accurate and rapidly calibrating speech neuro- prosthesis,”N. Engl. J. Med., vol. 391, no. 7, pp. 609–618, Aug. 2024

  2. [2]

    Inner speech in motor cortex and implications for speech neuroprostheses,

    E. M. Kunzet al., “Inner speech in motor cortex and implications for speech neuroprostheses,”Cell, vol. 188, no. 17, pp. 4658–4673, Aug. 2025

  3. [3]

    A step-by-step tutorial for a motor imagery–based BCI,

    H. Cho, M. Ahn, M. Kwon, and S. C. Jun, “A step-by-step tutorial for a motor imagery–based BCI,” inBrain–Computer Interfaces Handbook. Boca Raton: CRC Press, 2018, pp. 445–460

  4. [4]

    How visual stimuli evoked P300 is transforming the brain-computer interface landscape: A PRISMA compliant systematic review,

    J. Kalraet al., “How visual stimuli evoked P300 is transforming the brain-computer interface landscape: A PRISMA compliant systematic review,”IEEE Trans. Neural Syst. Rehabil. Eng., vol. 31, pp. 1429– 1439, 2023

  5. [5]

    Towards solving of the illiteracy phenomenon for VEP-based brain- computer interfaces,

    I. V olosyak, A. Rezeika, M. Benda, F. Gembler, and P. Stawicki, “Towards solving of the illiteracy phenomenon for VEP-based brain- computer interfaces,”Biomed. Phys. Eng. Express, vol. 6, no. 3, May 2020

  6. [6]

    Systems, subjects, sessions: To what extent do these factors influence EEG data?,

    A. Melniket al., “Systems, subjects, sessions: To what extent do these factors influence EEG data?,”Front. Hum. Neurosci., vol. 11, pp. 1–20, 2017

  7. [7]

    Mind the traps! Design guidelines for rigorous BCI experiments,

    C. Jeunetet al., “Mind the traps! Design guidelines for rigorous BCI experiments,” inBrain–Computer Interfaces Handbook. Boca Raton: CRC Press, 2018, pp. 613–634

  8. [8]

    Is it significant? Guidelines for reporting BCI per- formance,

    M. Billingeret al., “Is it significant? Guidelines for reporting BCI per- formance,” inTowards Practical Brain-Computer Interfaces. Springer, 2012, pp. 333–354

  9. [9]

    Performance as- sessment in brain-computer interface-based augmentative and alternative communication,

    D. E. Thompson, S. Blain-Moraes, and J. E. Huggins, “Performance as- sessment in brain-computer interface-based augmentative and alternative communication,”Biomed. Eng. Online, vol. 12, no. 1, 2013

  10. [10]

    Performance measurement for brain–computer or brain–machine interfaces: A tutorial,

    D. E. Thompsonet al., “Performance measurement for brain–computer or brain–machine interfaces: A tutorial,”J. Neural Eng., vol. 11, no. 3, p. 035001, 2014

  11. [11]

    Face stimuli effectively prevent brain-computer interface inefficiency in patients with neurodegenerative disease,

    T. Kaufmannet al., “Face stimuli effectively prevent brain-computer interface inefficiency in patients with neurodegenerative disease,”Clin. Neurophysiol., vol. 124, no. 5, pp. 893–900, 2013

  12. [12]

    An efficient ERP- based brain-computer interface using random set presentation and face familiarity,

    S.-K. Yeom, S. Fazli, K.-R. M ¨uller, and S.-W. Lee, “An efficient ERP- based brain-computer interface using random set presentation and face familiarity,”PLoS One, vol. 9, no. 11, p. e111157, Nov. 2014

  13. [13]

    A study of the existing problems of estimating the information transfer rate in online brain–computer interfaces,

    P. Yuan, X. Gao, B. Allison, Y . Wang, G. Bin, and S. Gao, “A study of the existing problems of estimating the information transfer rate in online brain–computer interfaces,”J. Neural Eng., vol. 10, no. 2, p. 026014, Apr. 2013

  14. [14]

    An auditory oddball (P300) spelling system for brain- computer interfaces,

    A. Furdeaet al., “An auditory oddball (P300) spelling system for brain- computer interfaces,”Psychophysiology, vol. 46, no. 3, pp. 617–625, May 2009

  15. [15]

    A novel P300-based brain-computer interface stimulus presentation paradigm: Moving beyond rows and columns,

    G. Townsendet al., “A novel P300-based brain-computer interface stimulus presentation paradigm: Moving beyond rows and columns,” Clin. Neurophysiol., vol. 121, no. 7, pp. 1109–1120, Jul. 2010

  16. [16]

    Evaluation of the performances of different P300 based brain–computer interfaces by means of the efficiency met- ric,

    L. R. Quitadamoet al., “Evaluation of the performances of different P300 based brain–computer interfaces by means of the efficiency met- ric,”J. Neurosci. Methods, vol. 203, no. 2, pp. 361–368, Jan. 2012

  17. [17]

    Average time con- sumption per character: A practical performance metric for generic synchronous BCI spellers,

    Z. Wang, H. Hu, T. Zhou, T. Xu, and X. Zhao, “Average time con- sumption per character: A practical performance metric for generic synchronous BCI spellers,”IEEE Trans. Biomed. Eng., vol. 71, no. 9, pp. 2684–2698, 2024

  18. [18]

    Classifier-based latency estimation: A novel way to estimate and predict BCI accuracy,

    D. E. Thompson, S. Warschausky, and J. E. Huggins, “Classifier-based latency estimation: A novel way to estimate and predict BCI accuracy,” J. Neural Eng., vol. 10, no. 1, 2013

  19. [19]

    Projected accuracy metric for the P300 speller,

    K. Colwell, C. Throckmorton, L. Collins, and K. Morton, “Projected accuracy metric for the P300 speller,”IEEE Trans. Neural Syst. Rehabil. Eng., vol. 22, no. 5, pp. 921–925, 2014

  20. [20]

    Evaluating machine learning models and their diagnostic value,

    G. Varoquaux and O. Colliot, “Evaluating machine learning models and their diagnostic value,” inNeuromethods, O. Colliot, Ed. New York, NY: Springer, 2023, pp. 601–630

  21. [21]

    The balanced accuracy and its posterior distribution,

    K. H. Brodersen, C. S. Ong, K. E. Stephan, and J. M. Buhmann, “The balanced accuracy and its posterior distribution,” inProc. 20th Int. Conf. Pattern Recognit., Aug. 2010, pp. 3121–3124

  22. [22]

    The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation,

    D. Chicco and G. Jurman, “The advantages of the Matthews correlation coefficient (MCC) over F1 score and accuracy in binary classification evaluation,”BMC Genomics, vol. 21, no. 1, p. 6, Dec. 2020

  23. [23]

    An introduction to ROC analysis,

    T. Fawcett, “An introduction to ROC analysis,”Pattern Recognit. Lett., vol. 27, no. 8, pp. 861–874, Jun. 2006

  24. [24]

    The precision-recall plot is more informa- tive than the ROC plot when evaluating binary classifiers on imbalanced datasets,

    T. Saito and M. Rehmsmeier, “The precision-recall plot is more informa- tive than the ROC plot when evaluating binary classifiers on imbalanced datasets,”PLoS One, vol. 10, no. 3, p. e0118432, Mar. 2015

  25. [25]

    Recall, precision and average precision,

    M. Zhu, “Recall, precision and average precision,”Dep. Stat. Actuar . Sci., pp. 1–11, 2004

  26. [26]

    Precision-recall-gain curves: PR analysis done right,

    P. Flach and M. Kull, “Precision-recall-gain curves: PR analysis done right,” inAdv. Neural Inf. Process. Syst., 2015

  27. [27]

    Partial AUC estimation and regression,

    L. E. Dodd and M. S. Pepe, “Partial AUC estimation and regression,” Biometrics, vol. 59, no. 3, pp. 614–623, Sep. 2003

  28. [28]

    Supervised learning of probability distribu- tions by neural networks,

    E. Baum and F. Wilczek, “Supervised learning of probability distribu- tions by neural networks,” inNeural Inf. Process. Syst., 1987

  29. [29]

    Verification of forecasts expressed in terms of probability,

    G. W. Brier, “Verification of forecasts expressed in terms of probability,” Mon. Weather Rev., vol. 78, no. 1, pp. 1–3, Jan. 1950

  30. [30]

    On calibration of modern neural networks,

    C. Guo, G. Pleiss, Y . Sun, and K. Q. Weinberger, “On calibration of modern neural networks,” inProc. 34th Int. Conf. Mach. Learn., 2017, pp. 2130–2143

  31. [31]

    Effects of the presentation order of stimulations in sequential ERP/SSVEP hybrid brain-computer interface,

    O. Bekhelifi, N.-E. Berrached, and A. Bendahmane, “Effects of the presentation order of stimulations in sequential ERP/SSVEP hybrid brain-computer interface,”Biomed. Phys. Eng. Express, vol. 10, no. 3, p. 035009, May 2024

  32. [32]

    EEG dataset and OpenBMI toolbox for three BCI paradigms: An investigation into BCI illiteracy,

    M. H. Leeet al., “EEG dataset and OpenBMI toolbox for three BCI paradigms: An investigation into BCI illiteracy,”Gigascience, vol. 8, no. 5, May 2019

  33. [33]

    xDAWN algorithm to enhance evoked potentials: Application to brain-computer interface,

    B. Rivet, A. Souloumiac, V . Attina, and G. Gibert, “xDAWN algorithm to enhance evoked potentials: Application to brain-computer interface,” IEEE Trans. Biomed. Eng., vol. 56, no. 8, pp. 2035–2043, Aug. 2009

  34. [34]

    EEG-TCNet: An accurate temporal convolu- tional network for embedded motor-imagery brain–machine interfaces,

    T. M. Ingolfssonet al., “EEG-TCNet: An accurate temporal convolu- tional network for embedded motor-imagery brain–machine interfaces,” inProc. IEEE Int. Conf. Syst., Man, Cybern., Oct. 2020, pp. 2958–2965. 6