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New strategies to improve minimap2 alignment accuracy

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arxiv 2108.03515 v1 pith:KHPSHCG3 submitted 2021-08-07 q-bio.GN

New strategies to improve minimap2 alignment accuracy

classification q-bio.GN
keywords minimap2accuracyaccuratelyaddressingalignaligneralignmentavailability
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Summary: We present several recent improvements to minimap2, a versatile pairwise aligner for nucleotide sequences. Now minimap2 v2.22 can more accurately map long reads to highly repetitive regions and align through insertions or deletions up to 100kb by default, addressing major weakness in minimap2 v2.18 or earlier. Availability and implementation: https://github.com/lh3/minimap2

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