On the Physical Nature of Ly$\alpha$ Transmission Spikes in High Redshift Quasar Spectra

We investigate Lyman-alpha (Ly$\alpha$) transmission spikes at $5.2 < z < 6.8$ using synthetic quasar spectra from the ``Cosmic Reionization On Computers" simulations. We focus on understanding the relationship between these spikes and the properties of the intergalactic medium (IGM). Disentangling the complex interplay between IGM physics and the influence of galaxies on the generation of these spikes presents a significant challenge. To address this, we employ Explainable Boosting Machines, an interpretable machine learning algorithm, to quantify the relative impact of various IGM properties on the Ly$\alpha$ flux. Our findings reveal that gas density is the primary factor influencing absorption strength, followed by the intensity of background radiation and the temperature of the IGM. Ionizing radiation from local sources (i.e. galaxies) appears to have a minimal effect on Ly$\alpha$ flux. The simulations show that transmission spikes predominantly occur in regions of low gas density. Our results challenge recent observational studies suggesting the origin of these spikes in regions with enhanced radiation. We demonstrate that Ly$\alpha$ transmission spikes are largely a product of the large-scale structure, of which galaxies are biased tracers.