Typed states for the displayed outbound observations.
Source: paper_references, paper_reference_links, observed 2026-08-15T15:25:23.863323Z
Paper Citation Record · LEDGER
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows
As of 19 August 2026, this Paper Citation Record lists 48 of 48 outbound references and 0 inbound Pith citation observations for arXiv:2608.02642.
A citation records a reference. It does not transfer a finding from one paper to another.
Coverage vector
One-hop event checks from named stored sources.
Source: scholarly_work_events, retraction_status_cache, observed 2026-08-19T06:32:44.657259+00:00
Pith citing papers itemized under the disclosed page cap.
Source: paper_references, paper_reference_links
A source-named dated measurement, never combined with another source.
Source: cited_works
Reference resolution
48 of 48 outbound references displayed
- verified exact4
- verified fuzzy25
- unresolved19
- parse uncertain0
- malformed identifier0
- metadata mismatch0
External citation measurements
No source-named external measurement is stored.
Outbound references
Observation aef25bd3-e942-4b97-9f27-224cbe55408f · outbound
This paper cites , title =.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows , title =
Reference 1
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.535480Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 45b2b995-8429-4dbf-8a91-d30de51d9b16 · outbound
This paper cites doi:10.5281/zenodo.20953922 , url =.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows doi:10.5281/zenodo.20953922 , url =
Reference 2
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 5c0051c8-753f-4dea-9dda-76da300ef757 · outbound
This paper cites Qwen3 Technical Report.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Qwen3 Technical Report
Reference 3
- Resolution
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation caa7a204-63a2-40e3-8e6f-842fff5f03a1 · outbound
This paper cites Computer Physics Communications , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Computer Physics Communications , volume=
Reference 4
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation ae0f7150-0278-4bbc-b9de-3c3043cfdede · outbound
This paper cites Journal of Computational Chemistry , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Computational Chemistry , volume=
Reference 5
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.496306Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 44908388-6a22-4c6b-ac0c-ac2a98b85c0a · outbound
This paper cites Gemini: A Family of Highly Capable Multimodal Models.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Gemini: A Family of Highly Capable Multimodal Models
Reference 6
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 50696fab-3533-47c2-b01f-b1a73d4c09e0 · outbound
This paper cites 0] , author=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows 0] , author=
Reference 7
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.449464Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation d2854b4a-36fe-4962-879e-e88cfed4e1af · outbound
This paper cites BMC Research Notes , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows BMC Research Notes , volume=
Reference 8
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.404045Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 7c17b49e-8c06-4893-8784-3ac772bbaf8e · outbound
This paper cites 0: the sage small molecule force field , author=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows 0: the sage small molecule force field , author=
Reference 9
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.373266Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation c050d89f-d95d-490d-b399-d84fd1077adb · outbound
This paper cites Release , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Release , volume=
Reference 10
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 536238e9-c9ad-4b23-8a2e-a0d1ff19adad · outbound
This paper cites Journal of Cheminformatics , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Cheminformatics , volume=
Reference 11
- Resolution
- verified fuzzy
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Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 463702f8-1794-4852-91b2-6cd408022dc5 · outbound
This paper cites International Conference on Machine Learning , pages=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows International Conference on Machine Learning , pages=
Reference 12
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.277174Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation dd019d9a-49c3-497b-aa59-99e02092549e · outbound
This paper cites Journal of Open Source Software , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Open Source Software , volume=
Reference 13
- Resolution
- verified fuzzy
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Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 54e553ac-d67d-4fc1-a044-8a67774268ca · outbound
This paper cites Computer Physics Communications , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Computer Physics Communications , volume=
Reference 14
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.207407Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 75e8b60c-4580-414a-9318-a809e1da6362 · outbound
This paper cites The Journal of Chemical Physics , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows The Journal of Chemical Physics , volume=
Reference 15
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.186311Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation a04ed5ca-e8bb-4320-8f45-675708215a70 · outbound
This paper cites PLOS ONE , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows PLOS ONE , volume=
Reference 16
- Resolution
- verified fuzzy
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Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 3cd87be2-488f-4088-831f-060f31f2f34c · outbound
This paper cites Journal of Open Source Software , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Open Source Software , volume=
Reference 17
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.123614Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 3981b578-6231-4973-ae78-123aac53cd30 · outbound
This paper cites Journal of Chemical Information and Modeling , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Chemical Information and Modeling , volume=
Reference 18
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.094794Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 4a36cc05-5b70-4882-8bb9-fac922e4aa9b · outbound
This paper cites DeepSeek-V3 Technical Report.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows DeepSeek-V3 Technical Report
Reference 19
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.606015Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation d83a2e00-97bc-4876-89b3-7a0375d4931a · outbound
This paper cites Automating MD simulations for Proteins using Large language Models: NAMD-Agent.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Automating MD simulations for Proteins using Large language Models: NAMD-Agent
Reference 20
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.615928Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation df8d2ba7-4bef-4190-acf1-5579b993cd11 · outbound
This paper cites and Tanikanti, Aditya and Ke.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows and Tanikanti, Aditya and Ke
Reference 21
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.071864Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 0424b76d-0cc6-439a-b96e-21091fbb98f6 · outbound
This paper cites 2025 , eprint =.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows 2025 , eprint =
Reference 22
- Resolution
- verified exact
- doi, observed 2026-08-15T15:25:24.349564Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 7ab55fa8-94df-45b0-a448-5bb172486d27 · outbound
This paper cites 2026 , eprint =.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows 2026 , eprint =
Reference 23
- Resolution
- verified exact
- doi, observed 2026-08-15T15:25:24.239599Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 7fed8692-c34c-4dc3-b0c5-da3d9e775426 · outbound
This paper cites PolyJarvis: An LLM-Orchestrated Agent for Automated All-Atom Molecular Dynamics of Amorphous Homopolymers.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows PolyJarvis: An LLM-Orchestrated Agent for Automated All-Atom Molecular Dynamics of Amorphous Homopolymers
Reference 24
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.647401Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 7b798736-b641-4e39-a7ec-4c7cc575923a · outbound
This paper cites MDAgent: A Multi-Agent Framework for End-to-End Molecular Dynamics Research.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows MDAgent: A Multi-Agent Framework for End-to-End Molecular Dynamics Research
Reference 25
- Resolution
- verified exact
- local_arxiv, observed 2026-08-15T15:25:24.104110Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation ec7c2bc7-2533-4933-ad89-e3e63545f04f · outbound
This paper cites MDGYM: Benchmarking AI Agents on Molecular Simulations.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows MDGYM: Benchmarking AI Agents on Molecular Simulations
Reference 26
- Resolution
- verified exact
- local_arxiv, observed 2026-08-15T15:25:24.063076Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation e9ebdf69-1055-458a-955b-7925b6e957df · outbound
This paper cites and Coveney, Peter V.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows and Coveney, Peter V
Reference 27
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.032260Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 40ef5574-4358-4960-a7c9-bf33409209fc · outbound
This paper cites Journal of Chemical Theory and Computation , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Chemical Theory and Computation , volume=
Reference 28
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:25.007833Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 379c4762-b8f5-4774-b0da-8b9c601ab0e1 · outbound
This paper cites Journal of Chemical Theory and Computation , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Chemical Theory and Computation , volume=
Reference 29
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.970890Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 9e2c92a0-502a-484e-9ef6-bb5ea0037950 · outbound
This paper cites Wiley Interdisciplinary Reviews: Computational Molecular Science , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Wiley Interdisciplinary Reviews: Computational Molecular Science , volume=
Reference 30
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.946999Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation eb3dbc9c-277e-45a6-8b15-7e334533e50a · outbound
This paper cites A Survey of Large Language Models.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows A Survey of Large Language Models
Reference 31
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation dbf6c133-a4c0-47d2-998b-c528e6339248 · outbound
This paper cites ACM Transactions on Software Engineering and Methodology , year=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows ACM Transactions on Software Engineering and Methodology , year=
Reference 32
- Resolution
- verified fuzzy
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Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 7cc09266-df6f-43b3-b396-0005289970d7 · outbound
This paper cites 2023 , doi =.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows 2023 , doi =
Reference 33
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.906420Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 6b02981f-cf72-4364-9ba8-cff2a714f3fa · outbound
This paper cites SoftwareX , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows SoftwareX , volume=
Reference 34
- Resolution
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation a1048db9-625a-47f1-9286-7fe174f1c110 · outbound
This paper cites The Journal of Physical Chemistry B , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows The Journal of Physical Chemistry B , volume=
Reference 35
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.863806Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 0c934d55-68e5-4d1e-a08e-30c702485c95 · outbound
This paper cites Nature , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Nature , volume=
Reference 36
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 0bc9e748-b6f3-4486-8b48-7165e9c861d6 · outbound
This paper cites Journal of Computational Chemistry , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Computational Chemistry , volume=
Reference 37
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.808404Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation e7e4dddf-03ff-4a42-ac1e-20f3b1dd8384 · outbound
This paper cites Neuron , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Neuron , volume=
Reference 38
- Resolution
- unresolved
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Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 3e66a297-b960-45dc-b71c-c96c4b2dbd91 · outbound
This paper cites an unresolved cited work.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Unresolved cited work
Reference 39
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.781433Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation b80b6a9c-acfa-4fa4-80bf-08f6d496f0f7 · outbound
This paper cites an unresolved cited work.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Unresolved cited work
Reference 40
- Resolution
- unresolved
- raw_fallback, observed 2026-08-15T15:25:24.743884Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation c8127b96-c2bb-4f4a-a9d5-f26fb6fa567b · outbound
This paper cites Nature Reviews Methods Primers , volume =.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Nature Reviews Methods Primers , volume =
Reference 41
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.700392Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation dc44b13a-d907-4f85-b2a2-c6960011423a · outbound
This paper cites and Wettig, Alexander and Lieret, Kilian and Yao, Shunyu and Narasimhan, Karthik R.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows and Wettig, Alexander and Lieret, Kilian and Yao, Shunyu and Narasimhan, Karthik R
Reference 42
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.664919Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 5625be1b-aa18-4e32-8297-a0187b3da7b0 · outbound
This paper cites an unresolved cited work.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Unresolved cited work
Reference 43
- Resolution
- unresolved
- raw_fallback, observed 2026-08-15T15:25:24.635787Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation d6f2a173-58df-40b3-b29b-5594bf5d4efe · outbound
This paper cites Meta-Harness: End-to-End Optimization of Model Harnesses.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Meta-Harness: End-to-End Optimization of Model Harnesses
Reference 44
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.829315Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 69997316-9ad3-45b0-9ab3-88f792b76b22 · outbound
This paper cites Harness Updating Is Not Harness Benefit: Disentangling Evolution Capabilities in Self-Evolving LLM Agents.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Harness Updating Is Not Harness Benefit: Disentangling Evolution Capabilities in Self-Evolving LLM Agents
Reference 45
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.839703Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation d3f684dd-0b84-49c8-a56c-4a7ab00f35a3 · outbound
This paper cites Agentic Harness Engineering: Observability-Driven Automatic Evolution of Coding-Agent Harnesses.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Agentic Harness Engineering: Observability-Driven Automatic Evolution of Coding-Agent Harnesses
Reference 46
- Resolution
- unresolved
- no resolver link, observed 2026-08-15T15:25:23.846519Z
Source-reported events for the cited work
Unavailable: canonical work link unavailable.
Observation 535522c7-5991-416d-a110-24887019ab12 · outbound
This paper cites Journal of Computer-Aided Molecular Design , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Journal of Computer-Aided Molecular Design , volume=
Reference 47
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.605376Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Observation 6c9c3981-17b6-4dd4-88db-0ee5c4436353 · outbound
This paper cites Nature Communications , volume=.
MDArena: Evaluating Coding Agents on Realistic Molecular Dynamics Workflows Nature Communications , volume=
Reference 48
- Resolution
- verified fuzzy
- raw_fallback, observed 2026-08-15T15:25:24.562464Z
Source-reported events for the cited work
No event found in the named queried sources as of 2026-08-19T06:32:44.657259+00:00.
Pith citing papers
No inbound Pith citation observations are available.