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De-identification is not enough: a comparison between de-identified and synthetic clinical notes

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arxiv 2402.00179 v2 pith:TAJSDHOP submitted 2024-01-31 cs.CL

classification cs.CL
keywords notesclinicaldatarealgeneratedsyntheticsyntheticallyalternative
verification ladder T0 review T1 audit T2 compute T3 formal
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For sharing privacy-sensitive data, de-identification is commonly regarded as adequate for safeguarding privacy. Synthetic data is also being considered as a privacy-preserving alternative. Recent successes with numerical and tabular data generative models and the breakthroughs in large generative language models raise the question of whether synthetically generated clinical notes could be a viable alternative to real notes for research purposes. In this work, we demonstrated that (i) de-identification of real clinical notes does not protect records against a membership inference attack, (ii) proposed a novel approach to generate synthetic clinical notes using the current state-of-the-art large language models, (iii) evaluated the performance of the synthetically generated notes in a clinical domain task, and (iv) proposed a way to mount a membership inference attack where the target model is trained with synthetic data. We observed that when synthetically generated notes closely match the performance of real data, they also exhibit similar privacy concerns to the real data. Whether other approaches to synthetically generated clinical notes could offer better trade-offs and become a better alternative to sensitive real notes warrants further investigation.

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Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Clinical Communication Processing with Models Trained on LLM-Generated Synthetic Data: A Structured Survey and Novel Application Case Studies

    cs.CL 2026-08 conditional novelty 6.0 of 10

    Synthetic clinical communication generated by LLMs can train clinical NLP models in thirteen case studies, but only one is tested on real patient text, leaving transfer to authentic communication unproven.

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