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Synthesizing Multimodal Electronic Health Records via Predictive Diffusion Models

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arxiv 2406.13942 v1 pith:TGC5Q7JP submitted 2024-06-20 cs.LG

classification cs.LG
keywords datagenerationmodelehrpdpredictivequalityvisitaddress
verification ladder T0 review T1 audit T2 compute T3 formal
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Synthesizing electronic health records (EHR) data has become a preferred strategy to address data scarcity, improve data quality, and model fairness in healthcare. However, existing approaches for EHR data generation predominantly rely on state-of-the-art generative techniques like generative adversarial networks, variational autoencoders, and language models. These methods typically replicate input visits, resulting in inadequate modeling of temporal dependencies between visits and overlooking the generation of time information, a crucial element in EHR data. Moreover, their ability to learn visit representations is limited due to simple linear mapping functions, thus compromising generation quality. To address these limitations, we propose a novel EHR data generation model called EHRPD. It is a diffusion-based model designed to predict the next visit based on the current one while also incorporating time interval estimation. To enhance generation quality and diversity, we introduce a novel time-aware visit embedding module and a pioneering predictive denoising diffusion probabilistic model (PDDPM). Additionally, we devise a predictive U-Net (PU-Net) to optimize P-DDPM.We conduct experiments on two public datasets and evaluate EHRPD from fidelity, privacy, and utility perspectives. The experimental results demonstrate the efficacy and utility of the proposed EHRPD in addressing the aforementioned limitations and advancing EHR data generation.

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  1. SynEHRgy: Synthesizing Mixed-Type Structured Electronic Health Records using Decoder-Only Transformers

    cs.LG 2024-11 conditional novelty 5.0 of 10

    SynEHRgy tokenizes mixed-type MIMIC-III records into one sequence and trains a small decoder-only transformer to generate new synthetic patient records.

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