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Paper Citation Record · LEDGER

Accelerated Hydration Site Localization and Thermodynamic Profiling

As of 13 August 2026, this Paper Citation Record lists 57 of 57 outbound references and 0 inbound Pith citation observations for arXiv:2411.15618.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2411.15618 v1

Coverage vector

measured 57 of 57 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-12T14:10:49.132921Z

measured 57 of 57 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-13T06:32:02.005865+00:00

measured 0 of 0 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: cited_works

Reference resolution

57 of 57 outbound references displayed

  • verified exact0
  • verified fuzzy50
  • unresolved6
  • parse uncertain0
  • malformed identifier1
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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation e43d5e9f-1c56-43ac-9675-7fd3a2051677 · outbound

This paper cites [11] determination of water structure around biomolecules using x-ray and neutron diffraction methods.

Accelerated Hydration Site Localization and Thermodynamic Profiling [11] determination of water structure around biomolecules using x-ray and neutron diffraction methods

Reference 1

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation 609aa040-578b-41cc-8382-6484b39811ba · outbound

This paper cites Protein hydration dynamics in solution: a critical survey.

Accelerated Hydration Site Localization and Thermodynamic Profiling Protein hydration dynamics in solution: a critical survey

Reference 2

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

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Observation c6e1eeba-7cbc-4ff5-912d-23cf95c4cff8 · outbound

This paper cites Three-dimensional model of purple membrane obtained by electron microscopy.

Accelerated Hydration Site Localization and Thermodynamic Profiling Three-dimensional model of purple membrane obtained by electron microscopy

Reference 3

Resolution
verified fuzzy
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Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.876785Z digest=sha256:7afef19226f44fddab7d0565fe5d7338dfc4e83ba64313ea4f79b52d85504e52

Observation 0a539bf9-028f-4766-b3c8-630c299d49e1 · outbound

This paper cites The way to nmr structures of proteins.

Accelerated Hydration Site Localization and Thermodynamic Profiling The way to nmr structures of proteins

Reference 4

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:50.000750Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.882697Z digest=sha256:93e0c1c28339ae3b196db4a133d17673e643804890953bdfb51b13377e7d3977

Observation be95d54a-9e9e-41d1-a4b7-973220f51bdb · outbound

This paper cites The advances and limitations of the determination and applications of water structure in molecular engineering.

Accelerated Hydration Site Localization and Thermodynamic Profiling The advances and limitations of the determination and applications of water structure in molecular engineering

Reference 5

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.985836Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.887614Z digest=sha256:a9fe3c518703443fdbe6f95f5b9f959e606f42abf2fe56dab1c2b7c191f48f2c

Observation 25aa40ce-04fd-47db-8810-6e9c5e9f6ec0 · outbound

This paper cites Three-dimensional density profiles of water in contact with a solute of arbitrary shape: a rism approach.

Accelerated Hydration Site Localization and Thermodynamic Profiling Three-dimensional density profiles of water in contact with a solute of arbitrary shape: a rism approach

Reference 6

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.969098Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.892389Z digest=sha256:59d2adf0b5f51d24104813e28c8c61537ac456e5d54fa4392b1284d77f1f5d78

Observation 2d124ea5-ddb7-49de-b8a8-8a770a60b329 · outbound

This paper cites Self-consistent description of a metal–water interface by the kohn–sham density functional theory and the three-dimensional reference interaction site model.

Accelerated Hydration Site Localization and Thermodynamic Profiling Self-consistent description of a metal–water interface by the kohn–sham density functional theory and the three-dimensional reference interaction site model

Reference 7

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.953835Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.898433Z digest=sha256:ff46608741ce3772dafd8afbca910f5f41c4a589f8d95428390a8c663d449a72

Observation 4d1bbd4c-fa71-465e-85d1-b1a2a396914e · outbound

This paper cites Water molecules in protein–ligand interfaces.

Accelerated Hydration Site Localization and Thermodynamic Profiling Water molecules in protein–ligand interfaces

Reference 8

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.931826Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.902682Z digest=sha256:5fc4bae3f35fe0341e7bca7f4800b84a408d487cab6447e44a59cf9d25350de9

Observation 9bb5d7cf-4ce5-4816-a341-5f429fe1bd5e · outbound

This paper cites Modelling of solvent positions around polar groups in proteins.

Accelerated Hydration Site Localization and Thermodynamic Profiling Modelling of solvent positions around polar groups in proteins

Reference 9

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.911021Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.906978Z digest=sha256:ae1617eb5c3cfd7a316f6c40c6d8a882981972d9662149c984ac578f418d6a13

Observation a6ce448d-cf6b-496a-ad7d-f29185c04868 · outbound

This paper cites Evaluating free energies of binding and conservation of crystallographic waters using szmap.

Accelerated Hydration Site Localization and Thermodynamic Profiling Evaluating free energies of binding and conservation of crystallographic waters using szmap

Reference 10

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.886366Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.910859Z digest=sha256:142bf85eebc845494e262bdc3d497ebd8420585d2adfd35ca329e2d94a8476bd

Observation 39c09950-abbd-46fa-9e49-547d20cc823b · outbound

This paper cites High end gpcr design: crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks.

Accelerated Hydration Site Localization and Thermodynamic Profiling High end gpcr design: crafted ligand design and druggability analysis using protein structure, lipophilic hotspots and explicit water networks

Reference 11

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.872058Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.914969Z digest=sha256:9f6cba1589932e19ae5c4bfabae5ceb03c2d9e2b5da337d1b7cbe49f19773e08

Observation 26b1e11f-fa50-4ab0-ac51-ec39c3dafc10 · outbound

This paper cites A common reference framework for analyzing/comparing proteins and ligands.

Accelerated Hydration Site Localization and Thermodynamic Profiling A common reference framework for analyzing/comparing proteins and ligands

Reference 12

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.858709Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.919291Z digest=sha256:953c484c115df932c6eb7df20898b6ad2a86e836c8cb059f9e8f24c547ed1770

Observation c1383f4f-4d4e-4c39-90a8-b78f797c6417 · outbound

This paper cites Acquaalta: a directional approach to the solvation of ligand–protein complexes.

Accelerated Hydration Site Localization and Thermodynamic Profiling Acquaalta: a directional approach to the solvation of ligand–protein complexes

Reference 13

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.840902Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.923271Z digest=sha256:078807498ca9f9c9295d5b1f68f4d372dc1ff59d6808c65b9ae3cb56b4685d1c

Observation 4a61be52-d096-45d7-94e5-0b14c4502631 · outbound

This paper cites Algorithm for the systematic solvation of proteins based on the directionality of hydrogen bonds.

Accelerated Hydration Site Localization and Thermodynamic Profiling Algorithm for the systematic solvation of proteins based on the directionality of hydrogen bonds

Reference 14

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.826161Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.927299Z digest=sha256:407a276cb5e3c8b20f3ba7337747c50dbcf685c1d905739dcef45e6513474006

Observation b8c796d4-9a02-4fe7-aca7-caaa04fba21e · outbound

This paper cites Solvated docking: introducing water into the modelling of biomolecular complexes.

Accelerated Hydration Site Localization and Thermodynamic Profiling Solvated docking: introducing water into the modelling of biomolecular complexes

Reference 15

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.809658Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.931295Z digest=sha256:9382790e8ce75dd96e7fabd6203325b068596ca3f171a77854530a6e8f24db56

Observation c46d2490-b469-4ccb-aa97-cce1de04d98a · outbound

This paper cites Placement of water molecules in protein structures: from large-scale evaluations to single-case examples.

Accelerated Hydration Site Localization and Thermodynamic Profiling Placement of water molecules in protein structures: from large-scale evaluations to single-case examples

Reference 16

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.790350Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.935451Z digest=sha256:30e2559a6882612052ed98e626f85e3f5ed1b137a9c28f9641fe9393ba843675

Observation 7e65f21b-bf83-4f2b-a330-194ddf0573fc · outbound

This paper cites Watgen: an algorithm for modeling water networks at protein–protein interfaces.

Accelerated Hydration Site Localization and Thermodynamic Profiling Watgen: an algorithm for modeling water networks at protein–protein interfaces

Reference 17

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.775669Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.940195Z digest=sha256:327668e57900bf8f30ea98d4649d99e700747458b1da8e8d1a1b8346c7c91d96

Observation cc626ad6-7e63-4736-bb2c-9e581b6f3366 · outbound

This paper cites Prediction of water and metal binding sites and their affinities by using the fold-x force field.Proceedings of the National Academy of Sciences, 102(29):10147–10152, 2005.

Accelerated Hydration Site Localization and Thermodynamic Profiling Prediction of water and metal binding sites and their affinities by using the fold-x force field.Proceedings of the National Academy of Sciences, 102(29):10147–10152, 2005

Reference 18

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.761093Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.944399Z digest=sha256:36fbe0b5d15d299a85faeca9d915e58a2c36c9d5da83e5b479b2554b69b38184

Observation 9cb86a10-747a-4d05-8380-27f7c76b292c · outbound

This paper cites Waterdock 2.0: Water placement prediction for holo- structures with a pymol plugin.

Accelerated Hydration Site Localization and Thermodynamic Profiling Waterdock 2.0: Water placement prediction for holo- structures with a pymol plugin

Reference 19

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.746531Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.949286Z digest=sha256:ff3a6bc991e98415ba6581da69b784b105da0282d3624cb7885312cdd2cd848d

Observation f0325a67-67fb-41ff-ae3d-59e8e3b52f03 · outbound

This paper cites Protein pharmacophore selection using hydration-site analysis.Journal of chemical information and modeling, 52(4):1046–1060, 2012.

Accelerated Hydration Site Localization and Thermodynamic Profiling Protein pharmacophore selection using hydration-site analysis.Journal of chemical information and modeling, 52(4):1046–1060, 2012

Reference 20

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.730321Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.954983Z digest=sha256:9fab1c26aee5cae1f5349aa4dcb4823c823c69e31087b0ab403da594c13c1d48

Observation 581412df-f0db-4dc0-b3b8-7d669eab7f92 · outbound

This paper cites Analysis of factors influencing hydration site prediction based on molecular dynamics simulations.

Accelerated Hydration Site Localization and Thermodynamic Profiling Analysis of factors influencing hydration site prediction based on molecular dynamics simulations

Reference 21

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.714420Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.959304Z digest=sha256:a4cc125d1a006e417f3671995f14fb4d936d25ade2aba9bde3fff20c28cb514d

Observation 00117a78-96a7-472f-92a7-2b897a4b49a3 · outbound

This paper cites Dissecting the influence of protein flexibility on the location and thermodynamic profile of explicit water molecules in protein–ligand binding.

Accelerated Hydration Site Localization and Thermodynamic Profiling Dissecting the influence of protein flexibility on the location and thermodynamic profile of explicit water molecules in protein–ligand binding

Reference 22

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.698250Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.963783Z digest=sha256:cf19c17a690a90e5a1df8c922c07b04f5303a3b6e90bbc043de09ff8b2313dda

Observation cd8085fb-ded8-461b-b315-bf7d7e7a5b7e · outbound

This paper cites Prediction of the favorable hydration sites in a protein binding pocket and its application to scoring function formulation.

Accelerated Hydration Site Localization and Thermodynamic Profiling Prediction of the favorable hydration sites in a protein binding pocket and its application to scoring function formulation

Reference 23

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.681378Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.968643Z digest=sha256:b670f03584e1867b69e24f886e50fee259bbf741359b46a4a2746c8732861bc8

Observation f2bb114e-9d0f-4e97-a915-ce41f0faeaae · outbound

This paper cites Modeling the hydration layer around proteins: Hypred.

Accelerated Hydration Site Localization and Thermodynamic Profiling Modeling the hydration layer around proteins: Hypred

Reference 24

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.666740Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.973126Z digest=sha256:18f3972719beb4dd7ab8171636d872cf55c46c899750251c3d9f11c7c9e9bb18

Observation 5a1ceb9a-a6a4-42f9-afda-bdd30f985a61 · outbound

This paper cites Exploration of interfacial hydration networks of target–ligand complexes.

Accelerated Hydration Site Localization and Thermodynamic Profiling Exploration of interfacial hydration networks of target–ligand complexes

Reference 25

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.650786Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.977230Z digest=sha256:83aa76cb5330079d77820c180c2373fe6f03a5f21bd9b5145a3466bb913f92f2

Observation 5995a29c-b434-4d83-8148-8cf997bd1ee1 · outbound

This paper cites Mobility-based prediction of hydration structures of protein surfaces.

Accelerated Hydration Site Localization and Thermodynamic Profiling Mobility-based prediction of hydration structures of protein surfaces

Reference 26

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.636991Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.981383Z digest=sha256:f070a3ab556f620fe5c1f76ec5f2a8478122435aeb85c54f7cfd6d15de52b3b8

Observation 44841b11-006c-484b-8ab1-7ee2e92a6251 · outbound

This paper cites Role of the active-site solvent in the thermodynamics of factor xa ligand binding.

Accelerated Hydration Site Localization and Thermodynamic Profiling Role of the active-site solvent in the thermodynamics of factor xa ligand binding

Reference 27

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.619245Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.985564Z digest=sha256:72b95699be78ebf5576a45a486d4345c003a2da3ae58f18e1aa24b6ef56d2e91

Observation 221c1b93-40e7-41da-a418-3f219ae4eda8 · outbound

This paper cites Watsite: Hydration site prediction program with pymol interface, 2014.

Accelerated Hydration Site Localization and Thermodynamic Profiling Watsite: Hydration site prediction program with pymol interface, 2014

Reference 28

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.603409Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.990157Z digest=sha256:7d898a98f68ae3dea83f3760e008f77d5711c97e24bab00e88b660e777d5c78f

Observation 32f6cda6-b422-4acf-88a2-d04e5a2cd330 · outbound

This paper cites Watsite2.

Accelerated Hydration Site Localization and Thermodynamic Profiling Watsite2

Reference 29

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.587881Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.994226Z digest=sha256:7f33d5545707e43d711f80532d1f94d1c7ba08f01dbd15692b580fb02077bf94

Observation f37df354-96d0-469e-a385-c2e41e741118 · outbound

This paper cites an unresolved cited work.

Accelerated Hydration Site Localization and Thermodynamic Profiling Unresolved cited work

Reference 30

Resolution
unresolved
raw_fallback, observed 2026-08-12T14:10:49.573692Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:48.999047Z digest=sha256:fe461d0c19583fc8b859a2843a1d8c89b9094286bf4aeedf4c20ac13792ae457

Observation 9878e221-9629-4451-ab06-7591bcdd58f7 · outbound

This paper cites Galaxywater-cnn: Prediction of water positions on the protein structure by a 3d-convolutional neural network.

Accelerated Hydration Site Localization and Thermodynamic Profiling Galaxywater-cnn: Prediction of water positions on the protein structure by a 3d-convolutional neural network

Reference 31

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.559510Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.004075Z digest=sha256:ccfc38caaa40b82cfef6585ccd2181dbf17089bb843701af8ecb3ce4e192c9cd

Observation f2c548ce-c91f-46bb-8ab5-a1ac2405745e · outbound

This paper cites Hydraprot: A new deep learning tool for fast and accurate prediction of water molecule positions for protein structures.

Accelerated Hydration Site Localization and Thermodynamic Profiling Hydraprot: A new deep learning tool for fast and accurate prediction of water molecule positions for protein structures

Reference 32

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.544025Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.008143Z digest=sha256:a437016d7e38d92baa0e955843834b9fec104032db09cc075690b6143c67feea

Observation 7f8f05c9-8729-47d2-8a0a-3afdbe993eb3 · outbound

This paper cites Instantaneous generation of protein hydration properties from static structures.

Accelerated Hydration Site Localization and Thermodynamic Profiling Instantaneous generation of protein hydration properties from static structures

Reference 33

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.528187Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.012474Z digest=sha256:29e0a2c6cd9383f80eda9acd77b3936747a7d228b14c09e7ce85b2109fbec209

Observation d04c8350-7743-4b37-8935-ab91533a6326 · outbound

This paper cites Water position prediction with se (3)-graph neural network.

Accelerated Hydration Site Localization and Thermodynamic Profiling Water position prediction with se (3)-graph neural network

Reference 34

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.514387Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.017030Z digest=sha256:d5f4e954dc630c70c68c96f653fc496f77b7168f6e95d465ccce34f1bd8f6353

Observation 20d1dedb-a9f3-4ffe-ba8c-c04d84981342 · outbound

This paper cites Superwater: Predicting water molecule positions on protein structures by generative ai.

Accelerated Hydration Site Localization and Thermodynamic Profiling Superwater: Predicting water molecule positions on protein structures by generative ai

Reference 35

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.495896Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.021701Z digest=sha256:a57fc935e982cf5555e85bf03184462934e1ef6bece89758d875537d7d990860

Observation e0a0bc3a-6e72-4a7c-9b83-61874b8646c9 · outbound

This paper cites Prediction of molecular field points using se(3)-transformer model.

Accelerated Hydration Site Localization and Thermodynamic Profiling Prediction of molecular field points using se(3)-transformer model

Reference 36

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.481390Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.026326Z digest=sha256:a2d54d5cceb51107e6553615b5e880f57b83b2e03c5f26884f81487688522e9d

Observation 849f05ce-58b6-4232-b334-5f7cc91ab4ac · outbound

This paper cites Pedregosa, G.

Accelerated Hydration Site Localization and Thermodynamic Profiling Pedregosa, G

Reference 37

Resolution
unresolved
no resolver link, observed 2026-08-12T14:10:49.030606Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T14:10:49.030606Z digest=sha256:8c8d76afe0259ac313e17edf3a30956d7988c0dc7f5823f6792d2d1418aa1458

Observation 7f67c666-7cff-4b47-8e56-472cab8603a0 · outbound

This paper cites Graph attention networks, 2018.

Accelerated Hydration Site Localization and Thermodynamic Profiling Graph attention networks, 2018

Reference 38

Resolution
unresolved
no resolver link, observed 2026-08-12T14:10:49.035459Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T14:10:49.035459Z digest=sha256:728787e840cecb8e400c04b838fdba7ca960d7c8c80a2fdac6828d5cd8afeb78

Observation d53e3a06-3459-480d-ace7-9255261dc0b4 · outbound

This paper cites Efficient and accurate hydration site profiling for enclosed binding sites.

Accelerated Hydration Site Localization and Thermodynamic Profiling Efficient and accurate hydration site profiling for enclosed binding sites

Reference 39

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.450424Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.039671Z digest=sha256:80c46f00c59e77dddd9d6ec38a8c9e77f276e5814474038870e83cc674731e6e

Observation 2126f2fb-a88b-460e-8efe-b9288c87cac0 · outbound

This paper cites The pdbbind database: method- ologies and updates.

Accelerated Hydration Site Localization and Thermodynamic Profiling The pdbbind database: method- ologies and updates

Reference 40

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.434503Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.044688Z digest=sha256:d93192432d007a0095723c81847448467dccb78b57ad0229d5694c94a657b266

Observation 6ea9e8c1-d883-4d30-b571-3594bf47e15f · outbound

This paper cites Comparative assessment of scoring functions: the casf-2016 update.

Accelerated Hydration Site Localization and Thermodynamic Profiling Comparative assessment of scoring functions: the casf-2016 update

Reference 41

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.419382Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.049236Z digest=sha256:31e705e75d2dec0691d3f01b3ee3f305dbab541473b6fdc2e7114e1183e1b130

Observation 8373ee34-14be-490a-ab18-0ef209f4d803 · outbound

This paper cites Mmseqs2 enables sensitive protein sequence searching for the analysis of massive data sets.

Accelerated Hydration Site Localization and Thermodynamic Profiling Mmseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

Reference 42

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.405365Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.053696Z digest=sha256:e06e50f4a481de83d5f830613fd98c6786b7c50e7ebd56c33621e0422556e33c

Observation 67647498-4fac-4437-98b7-fe580eac5b3c · outbound

This paper cites Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments.

Accelerated Hydration Site Localization and Thermodynamic Profiling Protein and ligand preparation: parameters, protocols, and influence on virtual screening enrichments

Reference 43

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.391954Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.059433Z digest=sha256:871e9f6e96e3dddd6c9f9e5f5bfd0b025e2e4d5b1d65b28fcee4eeb2d47efae4

Observation 7f7ee6f5-7a12-41aa-ac01-f4c89fa5dd04 · outbound

This paper cites Scalable algorithms for molecular dynam- ics simulations on commodity clusters.

Accelerated Hydration Site Localization and Thermodynamic Profiling Scalable algorithms for molecular dynam- ics simulations on commodity clusters

Reference 44

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.377982Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.064357Z digest=sha256:675d288dfac57479e83152b0b80ca9eb83018a839f66662b781fda91a35e5844

Observation ef125011-c41b-41c7-8b47-7b0d03a9eedc · outbound

This paper cites Vmd: visual molecular dynamics.

Accelerated Hydration Site Localization and Thermodynamic Profiling Vmd: visual molecular dynamics

Reference 45

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.364078Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.068884Z digest=sha256:c43e097aaed64ff2ddd00dcbfce7280dc0736f63f17e45fb7b5952c62c30cd3b

Observation 78c77d5a-92c0-4cd8-8cb2-f03be2fcf1ef · outbound

This paper cites Calculation of thermodynamic properties of bound water molecules.

Accelerated Hydration Site Localization and Thermodynamic Profiling Calculation of thermodynamic properties of bound water molecules

Reference 46

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.349533Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.074131Z digest=sha256:a5542a926cf3e1f10657dfe05b2ef20b9e43577e498f18333d208cc25dfc13fc

Observation 58f64497-7c58-457f-86f4-771c61df0bba · outbound

This paper cites Mechanisms of disulfide bond formation in nascent polypeptides entering the secretory pathway.

Accelerated Hydration Site Localization and Thermodynamic Profiling Mechanisms of disulfide bond formation in nascent polypeptides entering the secretory pathway

Reference 47

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.334830Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.078883Z digest=sha256:131a22d2a13b6c5d6b5bc7a098b89861306749711ab7580eb805529761b43948

Observation 04fcf1c6-0208-43b5-a1b9-f606368f82a7 · outbound

This paper cites A buried water network modulates the activity of the escherichia coli disulphide catalyst dsba.

Accelerated Hydration Site Localization and Thermodynamic Profiling A buried water network modulates the activity of the escherichia coli disulphide catalyst dsba

Reference 48

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.318772Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.084229Z digest=sha256:1976da838da3d36860ef39c979211e3b41594215582ffacd4473bf6de3f85b8e

Observation e0be03c1-6f95-4bc6-9d5d-e091b11bd3ad · outbound

This paper cites Towards Out-Of-Distribution Generalization: A Survey.

Accelerated Hydration Site Localization and Thermodynamic Profiling Towards Out-Of-Distribution Generalization: A Survey

Reference 49

Resolution
unresolved
no resolver link, observed 2026-08-12T14:10:49.089460Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T14:10:49.089460Z digest=sha256:d260262cf30b6c2950f86e85810ebad41c20d71bdd90a1f92322a98e7694d191

Observation a2068aaf-0225-4ea2-99cd-cee4ab609502 · outbound

This paper cites The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality.

Accelerated Hydration Site Localization and Thermodynamic Profiling The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality

Reference 50

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.300870Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.095068Z digest=sha256:f54eac4dde4675f6b215a7e66747556881fb481cb537b9ee6c2cd9fa687102e2

Observation 549a636f-00c4-452c-b89f-3f7fdcbd7ebd · outbound

This paper cites Accurate structure prediction of biomolecular interactions with alphafold 3.

Accelerated Hydration Site Localization and Thermodynamic Profiling Accurate structure prediction of biomolecular interactions with alphafold 3

Reference 51

Resolution
unresolved
no resolver link, observed 2026-08-12T14:10:49.099290Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T14:10:49.099290Z digest=sha256:fbf4a8bbe61ca3a8ba24ea7fc4c5f9a3afc910fb4a5f29dcd940bf2fd01a2702

Observation adbcd501-ce29-472a-8db2-2874d1116587 · outbound

This paper cites Generalized biomolecular modeling and design with rosettafold all-atom.

Accelerated Hydration Site Localization and Thermodynamic Profiling Generalized biomolecular modeling and design with rosettafold all-atom

Reference 52

Resolution
unresolved
no resolver link, observed 2026-08-12T14:10:49.105088Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

source=pdf_text observed=2026-08-12T14:10:49.105088Z digest=sha256:986be26b71bf6753e6914683733a1514f74d46d61a559df8be6664eef86189f6

Observation b9ddd726-f510-42a9-811b-a02569d9ac79 · outbound

This paper cites Overcoming the challenges of membrane protein crystallography.

Accelerated Hydration Site Localization and Thermodynamic Profiling Overcoming the challenges of membrane protein crystallography

Reference 53

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.260808Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.111133Z digest=sha256:03a4cf3e937094d34e8112c75144582c8ba428f9b4c20004bbbabeeb8426bd6c

Observation 89bf2a97-5836-4e66-bd48-f04c0816be9f · outbound

This paper cites A guide to membrane protein x-ray crystallography.

Accelerated Hydration Site Localization and Thermodynamic Profiling A guide to membrane protein x-ray crystallography

Reference 54

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.245054Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.117088Z digest=sha256:c268ac5a15510ce61bd8975222871188f3559136a76ad6b302731044519a5cc2

Observation b9be1b18-f082-4432-bffa-33b196e992b2 · outbound

This paper cites Clarin-2 is essential for hearing by maintaining stereocilia integrity and function.

Accelerated Hydration Site Localization and Thermodynamic Profiling Clarin-2 is essential for hearing by maintaining stereocilia integrity and function

Reference 55

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.228356Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.122050Z digest=sha256:581bff5dac655103d67ac99196562033987f5c8d29be7d3888341b4fb06a0af7

Observation 8f2c6e95-fc8f-4324-a51d-e17232f4512c · outbound

This paper cites Clarin-2 gene supplementation durably preserves hearing in a model of progressive hearing loss.

Accelerated Hydration Site Localization and Thermodynamic Profiling Clarin-2 gene supplementation durably preserves hearing in a model of progressive hearing loss

Reference 56

Resolution
verified fuzzy
raw_fallback, observed 2026-08-12T14:10:49.213912Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.127861Z digest=sha256:033f3298a1af15020dd7902782d9769eb11dbb20bf4d7e8c9051a1edf6a44902

Observation eb1aeca6-f309-4d8f-a240-31263ed04996 · outbound

This paper cites ground truth.

Accelerated Hydration Site Localization and Thermodynamic Profiling ground truth

Reference 57

Resolution
malformed identifier
raw_fallback, observed 2026-08-12T14:10:49.198369Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-13T06:32:02.005865+00:00.

source=pdf_text observed=2026-08-12T14:10:49.132921Z digest=sha256:bd71e0076b2f3f30d98c27a3d0bf058bcfa81252940c60854f4345c0fbf33283

Pith citing papers

No inbound Pith citation observations are available.