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Paper Citation Record · LEDGER

How genome redundancy can promote evolutionary innovation

As of 16 August 2026, this Paper Citation Record lists 52 of 52 outbound references and 0 inbound Pith citation observations for arXiv:2607.17687.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2607.17687 v1

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measured 52 of 52 reference resolution

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52 of 52 outbound references displayed

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Outbound references

Observation 4c066045-11b9-4b81-9f29-b64825d717cd · outbound

This paper cites The nature of the last universal common ancestor and its impact on the early earth system.Nature Ecology & Evolution, 8(9):1654–1666, 2024.

How genome redundancy can promote evolutionary innovation The nature of the last universal common ancestor and its impact on the early earth system.Nature Ecology & Evolution, 8(9):1654–1666, 2024

Reference 1

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Observation c4b03ff0-a0c2-44d3-a9c0-c1785e65d933 · outbound

This paper cites Tree of life reveals clock-like speciation and diversifica- tion.Molecular biology and evolution, 32(4):835– 845, 2015.

How genome redundancy can promote evolutionary innovation Tree of life reveals clock-like speciation and diversifica- tion.Molecular biology and evolution, 32(4):835– 845, 2015

Reference 2

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Observation 5081be49-52af-4c61-872e-b93613dd7f9d · outbound

This paper cites Insights into the role of dynamical features in protein complex for- mation: The case of sars-cov-2 spike binding with ace2.Computational and Structural Biotechnology Journal, 2025.

How genome redundancy can promote evolutionary innovation Insights into the role of dynamical features in protein complex for- mation: The case of sars-cov-2 spike binding with ace2.Computational and Structural Biotechnology Journal, 2025

Reference 3

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Observation 0d955690-ffe1-495c-99ec-750209ba1b2f · outbound

This paper cites Differences in the organization of interface residues tunes the stability of the sars- cov-2 spike-ace2 complex.Frontiers in Molecular Biosciences, 10:1205919, 2023.

How genome redundancy can promote evolutionary innovation Differences in the organization of interface residues tunes the stability of the sars- cov-2 spike-ace2 complex.Frontiers in Molecular Biosciences, 10:1205919, 2023

Reference 4

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Observation d0e3a9c4-5f54-4c6d-8484-f038abfcb5e5 · outbound

This paper cites The new mutation theory of phe- notypic evolution.Proceedings of the National Academy of Sciences, 104(30):12235–12242, 2007.

How genome redundancy can promote evolutionary innovation The new mutation theory of phe- notypic evolution.Proceedings of the National Academy of Sciences, 104(30):12235–12242, 2007

Reference 5

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Observation 182035d3-3b48-4c92-bd47-02894c00b71b · outbound

This paper cites Disentangling cell-intrinsic and cell-extrinsic factors underlying evolution.

How genome redundancy can promote evolutionary innovation Disentangling cell-intrinsic and cell-extrinsic factors underlying evolution

Reference 6

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Observation 1e39d451-563a-4d9f-91ff-14d8a72f296a · outbound

This paper cites The evolutionary significance of polyploidy.Nature Reviews Genetics, 18(7):411– 424, 2017.

How genome redundancy can promote evolutionary innovation The evolutionary significance of polyploidy.Nature Reviews Genetics, 18(7):411– 424, 2017

Reference 7

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Observation 662a0af8-c2e4-4908-b787-e5284b22c863 · outbound

This paper cites Polyploidy: an evo- lutionary and ecological force in stressful times.

How genome redundancy can promote evolutionary innovation Polyploidy: an evo- lutionary and ecological force in stressful times

Reference 8

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Observation ccd766de-e0ce-4bdf-91a8-95cecf2f0048 · outbound

This paper cites Polyploidy: pit- falls and paths to a paradigm.American journal of botany, 103(7):1146–1166, 2016.

How genome redundancy can promote evolutionary innovation Polyploidy: pit- falls and paths to a paradigm.American journal of botany, 103(7):1146–1166, 2016

Reference 9

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Observation 2e29ecd2-72c2-4f4f-9939-8cf9e908413f · outbound

This paper cites Genome duplication in amphibians and fish: an extended synthesis.Journal of zoology, 284(3):151–182, 2011.

How genome redundancy can promote evolutionary innovation Genome duplication in amphibians and fish: an extended synthesis.Journal of zoology, 284(3):151–182, 2011

Reference 10

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Observation 341c3094-7bfc-4c58-a47f-b7c2524af6dd · outbound

This paper cites Polyploid incidence and evolution.Annual review of genet- ics, 34(1):401–437, 2000.

How genome redundancy can promote evolutionary innovation Polyploid incidence and evolution.Annual review of genet- ics, 34(1):401–437, 2000

Reference 11

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Observation 9a7d408b-c2c2-48e5-8285-a2c084ca5ae1 · outbound

This paper cites Rarely success- ful polyploids and their legacy in plant genomes.

How genome redundancy can promote evolutionary innovation Rarely success- ful polyploids and their legacy in plant genomes

Reference 12

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Observation 32504973-45ee-4708-86f3-f402b8dd5f7d · outbound

This paper cites Methods for studying polyploid di- versification and the dead end hypothesis: a reply to soltis et al.(2014).New Phytologist, 206(1):27– 35, 2015.

How genome redundancy can promote evolutionary innovation Methods for studying polyploid di- versification and the dead end hypothesis: a reply to soltis et al.(2014).New Phytologist, 206(1):27– 35, 2015

Reference 13

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How genome redundancy can promote evolutionary innovation Unresolved cited work

Reference 14

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Observation 68147796-c3f2-4942-a021-1984e88572ee · outbound

This paper cites The frequency of polyploid speciation in vascular plants.Proceedings of the national Academy of sciences, 106(33):13875– 13879, 2009.

How genome redundancy can promote evolutionary innovation The frequency of polyploid speciation in vascular plants.Proceedings of the national Academy of sciences, 106(33):13875– 13879, 2009

Reference 15

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Observation 2bb6c335-9f93-4e32-b4e0-66a4748bff66 · outbound

This paper cites The more the better? the role of polyploidy in facilitating plant invasions.Annals of botany, 109(1):19–45, 2012.

How genome redundancy can promote evolutionary innovation The more the better? the role of polyploidy in facilitating plant invasions.Annals of botany, 109(1):19–45, 2012

Reference 16

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Observation f1e51c29-61c0-4473-91ca-1a72f1cd1871 · outbound

This paper cites Increased phenotypic plasticity to climate may have boosted the invasion suc- cess of polyploid centaurea stoebe.PloS one, 7(11):e50284, 2012.

How genome redundancy can promote evolutionary innovation Increased phenotypic plasticity to climate may have boosted the invasion suc- cess of polyploid centaurea stoebe.PloS one, 7(11):e50284, 2012

Reference 17

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Observation 1320a5de-11ec-4ff5-b0ad-059280d445c3 · outbound

This paper cites Polyploidy and ecological adapta- tion in wild yarrow.Proceedings of the National Academy of Sciences, 108(17):7096–7101, 2011.

How genome redundancy can promote evolutionary innovation Polyploidy and ecological adapta- tion in wild yarrow.Proceedings of the National Academy of Sciences, 108(17):7096–7101, 2011

Reference 18

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Observation 4d2f7e8d-736f-46db-99d3-5c27566b1ca7 · outbound

This paper cites Polyploidy and its effect on evolutionary success: old questions revisited with new tools.Heredity, 110(2):99–104, 2013.

How genome redundancy can promote evolutionary innovation Polyploidy and its effect on evolutionary success: old questions revisited with new tools.Heredity, 110(2):99–104, 2013

Reference 19

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Observation 09336404-e3a8-443d-b398-824a2b3f077b · outbound

This paper cites Evolution vs the number of gene copies per primitive cell.Journal of molecular evo- lution, 20(1):71–76, 1984.

How genome redundancy can promote evolutionary innovation Evolution vs the number of gene copies per primitive cell.Journal of molecular evo- lution, 20(1):71–76, 1984

Reference 20

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This paper cites Oxford University Press, 1999.

How genome redundancy can promote evolutionary innovation Oxford University Press, 1999

Reference 21

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Observation 1286b6e3-6b35-409c-b8b1-403598426b39 · outbound

This paper cites Springer Science & Business Media, 2013.

How genome redundancy can promote evolutionary innovation Springer Science & Business Media, 2013

Reference 22

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Observation 1cd5d353-b076-4e36-9c40-466770ec8c90 · outbound

This paper cites Evolutionary innovation by polyploidy.PRX Life, 2(4):043021, 2024.

How genome redundancy can promote evolutionary innovation Evolutionary innovation by polyploidy.PRX Life, 2(4):043021, 2024

Reference 23

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Observation e790a616-d5e2-436f-b9b5-8454512ea82f · outbound

This paper cites Inference of polyploid origin and inheritance mode from population genomic data.

How genome redundancy can promote evolutionary innovation Inference of polyploid origin and inheritance mode from population genomic data

Reference 24

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Observation 54e67c48-15d2-4943-bdbd-3487655453de · outbound

This paper cites Making a functional diploid: from polysomic to disomic inheritance.New Phytolo- gist, 186(1):113–122, 2010.

How genome redundancy can promote evolutionary innovation Making a functional diploid: from polysomic to disomic inheritance.New Phytolo- gist, 186(1):113–122, 2010

Reference 25

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How genome redundancy can promote evolutionary innovation Unresolved cited work

Reference 26

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Observation bb2a8135-42a4-4763-9e06-4f4836507204 · outbound

This paper cites Coordination of polyploid chromosome replication with cell size and growth in a cyanobacterium.MBio, 10(2):10–1128, 2019.

How genome redundancy can promote evolutionary innovation Coordination of polyploid chromosome replication with cell size and growth in a cyanobacterium.MBio, 10(2):10–1128, 2019

Reference 27

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Observation 98a9abde-18ac-4640-804e-12bd5f0520d2 · outbound

This paper cites Basic mechanism of eukary- otic chromosome segregation.Philosophical Trans- actions of the Royal Society B: Biological Sciences, 360(1455):609–621, 2005.

How genome redundancy can promote evolutionary innovation Basic mechanism of eukary- otic chromosome segregation.Philosophical Trans- actions of the Royal Society B: Biological Sciences, 360(1455):609–621, 2005

Reference 28

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Observation 76f80711-1257-4feb-a95c-552bf7ed7f0d · outbound

This paper cites Data and theory point to mainly ad- ditive genetic variance for complex traits.PLoS genetics, 4(2):e1000008, 2008.

How genome redundancy can promote evolutionary innovation Data and theory point to mainly ad- ditive genetic variance for complex traits.PLoS genetics, 4(2):e1000008, 2008

Reference 29

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This paper cites Sinauer asso- ciates Sunderland, MA, 2007.

How genome redundancy can promote evolutionary innovation Sinauer asso- ciates Sunderland, MA, 2007

Reference 30

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This paper cites The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms.Na- ture Reviews Genetics, 12(3):204–213, 2011.

How genome redundancy can promote evolutionary innovation The pleiotropic structure of the genotype–phenotype map: the evolvability of complex organisms.Na- ture Reviews Genetics, 12(3):204–213, 2011

Reference 31

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Observation e42976c2-0617-467e-a83b-f70c294606b6 · outbound

This paper cites The integrative biology of genetic domi- nance.Biological Reviews, 96(6):2925–2942, 2021.

How genome redundancy can promote evolutionary innovation The integrative biology of genetic domi- nance.Biological Reviews, 96(6):2925–2942, 2021

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Observation 12f4cc26-190d-4c54-b94f-e473f9f675ea · outbound

This paper cites Cyanobac- teria maintain constant protein concentration de- spite genome copy-number variation.Cell reports, 11 19(3):497–504, 2017.

How genome redundancy can promote evolutionary innovation Cyanobac- teria maintain constant protein concentration de- spite genome copy-number variation.Cell reports, 11 19(3):497–504, 2017

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Observation 65200249-681b-45b7-8125-44ba5e019f88 · outbound

This paper cites The molecular basis of carbon- starvation-induced general resistance in es- cherichia coli.Molecular microbiology, 5(1):3–10, 1991.

How genome redundancy can promote evolutionary innovation The molecular basis of carbon- starvation-induced general resistance in es- cherichia coli.Molecular microbiology, 5(1):3–10, 1991

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Observation 7f2befac-0034-45a7-8832-910ba57c6b10 · outbound

This paper cites Accelerated crossing of fitness valleys through division of labor and cheating in asexual populations.Scientific reports, 2(1):917, 2012.

How genome redundancy can promote evolutionary innovation Accelerated crossing of fitness valleys through division of labor and cheating in asexual populations.Scientific reports, 2(1):917, 2012

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source=pdf_text observed=2026-08-01T17:20:42.956503Z digest=sha256:1fc859b32afa7b87859d46d5ffa990c04ecc6eafd627f780d9a09a603987bcfd

Observation 2069e62b-80f8-451f-a8c6-39cbe86faa73 · outbound

This paper cites Rapid evo- lutionary escape by large populations from lo- cal fitness peaks is likely in nature.Evolution, 59(6):1175–1182, 2005.

How genome redundancy can promote evolutionary innovation Rapid evo- lutionary escape by large populations from lo- cal fitness peaks is likely in nature.Evolution, 59(6):1175–1182, 2005

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source=pdf_text observed=2026-08-01T17:20:43.005282Z digest=sha256:7a806372ac75183825915bfba087affdcbf917a3c4e9b834fe45ac6bc389b1c8

Observation 9546e929-a317-4a98-b530-e09479e62a0f · outbound

This paper cites The rate at which asexual populations cross fitness valleys.Theoret- ical population biology, 75(4):286–300, 2009.

How genome redundancy can promote evolutionary innovation The rate at which asexual populations cross fitness valleys.Theoret- ical population biology, 75(4):286–300, 2009

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source=pdf_text observed=2026-08-01T17:20:43.083445Z digest=sha256:ca9b3d381d64aeedd43a299429231464cb79bb699efaa4f4b80e1631963aeb3b

Observation 10c77927-1cfc-4242-90ff-ae7a020bff8f · outbound

This paper cites Natural selection and random ge- netic drift in phenotypic evolution.Evolution, pages 314–334, 1976.

How genome redundancy can promote evolutionary innovation Natural selection and random ge- netic drift in phenotypic evolution.Evolution, pages 314–334, 1976

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source=pdf_text observed=2026-08-01T17:20:43.139084Z digest=sha256:d796aee1e3f899d8b7396018b95ade7142c599c7424c6a20fa6f30f9003ca300

Observation 50429ce4-0374-42eb-a3fb-de819a6958cb · outbound

This paper cites Robust assessment of asymmetric division in colon cancer cells.eLife, 14:RP104528, 2026.

How genome redundancy can promote evolutionary innovation Robust assessment of asymmetric division in colon cancer cells.eLife, 14:RP104528, 2026

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source=pdf_text observed=2026-08-01T17:20:43.202539Z digest=sha256:93da7bab1243e758cfbb8e99c65b7fb1c8b96f41b1113726379fd1ff21585f07

Observation d4b6337a-8087-4bbd-a19b-3822e3d27093 · outbound

This paper cites Measuring and comparing evolvability and constraint in mul- tivariate characters.Journal of evolutionary biol- ogy, 21(5):1201–1219, 2008.

How genome redundancy can promote evolutionary innovation Measuring and comparing evolvability and constraint in mul- tivariate characters.Journal of evolutionary biol- ogy, 21(5):1201–1219, 2008

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source=pdf_text observed=2026-08-01T17:20:43.284515Z digest=sha256:3cf8b1a48c3a23a7a926fac996415b4837c196d01324219c00bafd23b0d02dd6

Observation cd3c3c1c-4285-403a-9095-35397ed07e2c · outbound

This paper cites Evolution of evolvability in a developmental model.Evolu- tion, 62(2):301–315, 2008.

How genome redundancy can promote evolutionary innovation Evolution of evolvability in a developmental model.Evolu- tion, 62(2):301–315, 2008

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source=pdf_text observed=2026-08-01T17:20:43.361395Z digest=sha256:c22f67ec6d1792af1af0a00a83f583fd588608aeef2b4fbc9e758b78a7d8c864

Observation 09a219d8-ad46-4100-9856-bf3eeb85ce92 · outbound

This paper cites Exploration-exploitation tradeoffs dic- tate the optimal distributions of phenotypes for populations subject to fitness fluctuations.Phys- ical Review E, 99(1):012417, 2019.

How genome redundancy can promote evolutionary innovation Exploration-exploitation tradeoffs dic- tate the optimal distributions of phenotypes for populations subject to fitness fluctuations.Phys- ical Review E, 99(1):012417, 2019

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source=pdf_text observed=2026-08-01T17:20:43.414546Z digest=sha256:cf173eb962fd533ff804cbe1d613d8dc6d618fc7799a38bcaa0eb7a1f68c83ef

Observation d437c6df-bcba-4abe-871b-be80206731fd · outbound

This paper cites Genome heterogeneity drives the evolution of species.

How genome redundancy can promote evolutionary innovation Genome heterogeneity drives the evolution of species

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source=pdf_text observed=2026-08-01T17:20:43.488839Z digest=sha256:a902294f5dbebe47b3f066e37cecac9c7219473bbaec97c81c1cc0cb38861747

Observation 04d657e1-263c-4151-928a-55ef05be2582 · outbound

This paper cites Macromolecular composition of spores from the filamentous cyanobacterium anabaena cylindrica.Journal of Bacteriology, 129(2):1154–1155, 1977.

How genome redundancy can promote evolutionary innovation Macromolecular composition of spores from the filamentous cyanobacterium anabaena cylindrica.Journal of Bacteriology, 129(2):1154–1155, 1977

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source=pdf_text observed=2026-08-01T17:20:43.545737Z digest=sha256:12ab2997a40571c9efb3a7a060da6507980368f0f1639b12bef70b51d9a5bb70

Observation 13a375a1-1e19-4ac5-8ac9-09cb3f128f17 · outbound

This paper cites Evolutionary changes in dnaa-dependent chromosomal replication in cyanobacteria.Frontiers in microbiology, 11:786, 2020.

How genome redundancy can promote evolutionary innovation Evolutionary changes in dnaa-dependent chromosomal replication in cyanobacteria.Frontiers in microbiology, 11:786, 2020

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source=pdf_text observed=2026-08-01T17:20:43.603697Z digest=sha256:9f2c3bcef5f63a912d30a9a6ef6d90094c46b8326cd9fd89467c1e1ef12410d7

Observation 8735a102-9305-4b04-9c9c-52aa0918f08e · outbound

This paper cites Ploidb: the plant ploidy database.New Phytol- ogist, 240(3):918–927, 2023.

How genome redundancy can promote evolutionary innovation Ploidb: the plant ploidy database.New Phytol- ogist, 240(3):918–927, 2023

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source=pdf_text observed=2026-08-01T17:20:43.684388Z digest=sha256:72e214d6139ace30a8b6a240ddaf9bfe4509ceb335f9d34c2be302a808997742

Observation 7fa773e0-cd7d-473f-82f5-fcbac84170cc · outbound

This paper cites an unresolved cited work.

How genome redundancy can promote evolutionary innovation Unresolved cited work

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source=pdf_text observed=2026-08-01T17:20:43.789344Z digest=sha256:da446b32f268b52cb96b95da373a98e6ad8ff7edd93c1426ccb0b19f482653e1

Observation c0978dae-084c-4172-91c6-4f9d1363679a · outbound

This paper cites The advantages and disadvan- tages of being polyploid.Nature reviews genetics, 6(11):836–846, 2005.

How genome redundancy can promote evolutionary innovation The advantages and disadvan- tages of being polyploid.Nature reviews genetics, 6(11):836–846, 2005

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source=pdf_text observed=2026-08-01T17:20:43.861164Z digest=sha256:02ad2bb9ba15a838a12706e67168a2a26c195275af15c97e7a5b933d4157edd0

Observation 1134cc1b-dfb7-40b6-9d6b-2b8775cf552c · outbound

This paper cites The evolution- ary theory of cancer: challenges and potential so- lutions.Nature Reviews Cancer, 24(10):718–733, 2024.

How genome redundancy can promote evolutionary innovation The evolution- ary theory of cancer: challenges and potential so- lutions.Nature Reviews Cancer, 24(10):718–733, 2024

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source=pdf_text observed=2026-08-01T17:20:43.959642Z digest=sha256:e07bbadb0457b257a5c7060e86efa1f288327afbe7e301a992d0f38165d44f6a

Observation 97a03d0c-85af-46d1-879a-f39f7806fbba · outbound

This paper cites Inheritance entropy: A model- independent method to probe the hereditary structure of cell lineage trees.PRX Life, 4(2):023023, 2026.

How genome redundancy can promote evolutionary innovation Inheritance entropy: A model- independent method to probe the hereditary structure of cell lineage trees.PRX Life, 4(2):023023, 2026

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source=pdf_text observed=2026-08-01T17:20:44.117099Z digest=sha256:ccdcfc70001284082da0a8f570d1ece4fb7bbba81503868b1a93073f67a0b548

Observation 10734cd5-de3a-42b6-aafb-47209ca9dc4b · outbound

This paper cites Lineage topology, replication kinetics and cell cycle synchronization reveal regulated growth dynamics in human bone marrow stromal cell colonies.Scientific Reports, 2026.

How genome redundancy can promote evolutionary innovation Lineage topology, replication kinetics and cell cycle synchronization reveal regulated growth dynamics in human bone marrow stromal cell colonies.Scientific Reports, 2026

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source=pdf_text observed=2026-08-01T17:20:44.188360Z digest=sha256:f532b3bf0eb10625b4440db0fb5cb96870660c9e4aa4ec24022ad7370f64e079

Observation 92685ba7-a029-4a7f-a909-98c7ecfda5e6 · outbound

This paper cites Exploring neural networks to uncover information- richer features for protein interaction predic- tion.European Biophysics Journal, 55(2):123–134, 2026.

How genome redundancy can promote evolutionary innovation Exploring neural networks to uncover information- richer features for protein interaction predic- tion.European Biophysics Journal, 55(2):123–134, 2026

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source=pdf_text observed=2026-08-01T17:20:44.261962Z digest=sha256:ff2433401d36cf00ff5d0d47f08efb0f7eb35d28c2f4f639d0ba7293bbfb529f

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