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Weighted Circle Fusion: Ensembling Circle Representation from Different Object Detection Results
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Recently, the use of circle representation has emerged as a method to improve the identification of spherical objects (such as glomeruli, cells, and nuclei) in medical imaging studies. In traditional bounding box-based object detection, combining results from multiple models improves accuracy, especially when real-time processing isn't crucial. Unfortunately, this widely adopted strategy is not readily available for combining circle representations. In this paper, we propose Weighted Circle Fusion (WCF), a simple approach for merging predictions from various circle detection models. Our method leverages confidence scores associated with each proposed bounding circle to generate averaged circles. We evaluate our method on a proprietary dataset for glomerular detection in whole slide imaging (WSI) and find a performance gain of 5% compared to existing ensemble methods. Additionally, we assess the efficiency of two annotation methods, fully manual annotation and a human-in-the-loop (HITL) approach, in labeling 200,000 glomeruli. The HITL approach, which integrates machine learning detection with human verification, demonstrated remarkable improvements in annotation efficiency. The Weighted Circle Fusion technique not only enhances object detection precision but also notably reduces false detections, presenting a promising direction for future research and application in pathological image analysis. The source code has been made publicly available at https://github.com/hrlblab/WeightedCircleFusion
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Cited by 2 Pith papers
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KPIs 2024 Challenge: Advancing Glomerular Segmentation from Patch- to Slide-Level
The KPIs 2024 challenge created a benchmark for glomerular segmentation in PAS-stained mouse kidney slides from four CKD models, and top models achieved Dice scores near 94 percent.
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GloFinder: AI-empowered QuPath Plugin for WSI-level Glomerular Detection, Visualization, and Curation
A new QuPath plugin uses five CircleNet models and weighted fusion to detect kidney glomeruli in whole slide images with a single click.
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