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arxiv: cond-mat/0110032 · v1 · submitted 2001-10-01 · ❄️ cond-mat.soft · q-bio.BM

How short-ranged electrostatics controls the chromatin structure on much larger scales

classification ❄️ cond-mat.soft q-bio.BM
keywords chromatinchaindegreedifferentsectionsshort-rangedactivityallows
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We propose that the degree of sweeling of the 30nm chromatin fiber (a "measure" of its transcriptional activity) is mainly determined by the short-ranged electrostatical interaction between different sections of the "folded" DNA chain. These sections constitute only a small fraction of the chain and they are located close to the entry-exit points of the DNA chain at the nucleosome core particles. We present a model that allows to estimate the degree of swelling of chromatin fibers as a function of salt concentration, charge density of the strands etc. Different mechanisms by which the state of chromatin can be controlled in vitro and in vivo are discussed.

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