pith. sign in

arxiv: q-bio/0603024 · v2 · submitted 2006-03-20 · 🧬 q-bio.BM · cond-mat.soft

Thermodynamics of aggregation of two proteins

classification 🧬 q-bio.BM cond-mat.soft
keywords aggregationproteinsstatedimerfindsmallsystemthermodynamically
0
0 comments X
read the original abstract

We investigate aggregation mechanism of two proteins in a thermodynamically unambiguous manner by considering the finite size effect of free energy landscape of HP lattice protein model. Multi-Self-Overlap-Ensemble Monte Carlo method is used for numerical calculations. We find that a dimer can be formed spontaneously as a thermodynamically stable state when the system is small enough. It implies the possibility that the aggregation of proteins in a cell is triggered when they are confined in a small region by, for example, being surrounded by other macromolecules.We also find that the dimer exhibits a transition between unstable state and metastable state in the infinite system.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.