LOGICA adds context to pretrained biological LMs via logit-space contrastive alignment with gated adapters, improving AUC on held-out drug-resistance mutation ranking from ~0.55 to ~0.65 while preserving token likelihoods.
Pairing interacting pro- tein sequences using masked language modeling.Proceedings of the National Academy of Sciences, 121(27):e2311887121, 2024
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Contextualizing Biological Language Models across Modalities via Logit-Space Contrastive Alignment
LOGICA adds context to pretrained biological LMs via logit-space contrastive alignment with gated adapters, improving AUC on held-out drug-resistance mutation ranking from ~0.55 to ~0.65 while preserving token likelihoods.