Langevin sampling on the modern Hopfield energy produces training-free stochastic attention that transitions from exact retrieval to generation as temperature rises, with an entropy inflection condition marking the shift.
Pfam: The protein families database in 2021.Nucleic Acids Research, 49(D1):D99–D106
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ProtoCol applies ColBERT-style late interaction on per-residue protein embeddings to improve remote homolog retrieval, outperforming pooled and alignment baselines on SCOPe and Pfam benchmarks.
Agentic AI platforms autonomously train 87%-accurate PPI prediction models on protein-disjoint data and induce aligning human-readable rules for human-human and virus-human interactions.
citing papers explorer
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Stochastic Attention via Langevin Dynamics on the Modern Hopfield Energy
Langevin sampling on the modern Hopfield energy produces training-free stochastic attention that transitions from exact retrieval to generation as temperature rises, with an entropy inflection condition marking the shift.
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PROTOCOL: Late Interaction Retrieval for Protein Homolog Search
ProtoCol applies ColBERT-style late interaction on per-residue protein embeddings to improve remote homolog retrieval, outperforming pooled and alignment baselines on SCOPe and Pfam benchmarks.
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Agentic AI platforms for autonomous training and rule induction of human-human and virus-human protein-protein interactions
Agentic AI platforms autonomously train 87%-accurate PPI prediction models on protein-disjoint data and induce aligning human-readable rules for human-human and virus-human interactions.