A new harmonized multi-dataset resource of small molecule perturbation transcriptomics is introduced, revealing weak cross-dataset logFC agreement but improved compound embedding performance in held-out evaluations.
ToxicoDB: an integrated database to mine and visualize large-scale toxicogenomic datasets.Nucleic Acids Research, 48(W1):W455–W462, July 2020
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Chem-PerturBridge: a harmonized compendium of small molecule perturbation transcriptomic effects
A new harmonized multi-dataset resource of small molecule perturbation transcriptomics is introduced, revealing weak cross-dataset logFC agreement but improved compound embedding performance in held-out evaluations.