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arxiv: 0907.5164 · v2 · pith:IAV557TNnew · submitted 2009-07-29 · 🧬 q-bio.QM · cond-mat.stat-mech· physics.bio-ph

Random Matrix approach to collective behavior and bulk universality in protein dynamics

classification 🧬 q-bio.QM cond-mat.stat-mechphysics.bio-ph
keywords bulkcollectivematrixproteinrandomuniversalityacidamino
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Covariance matrices of amino acid displacements, commonly used to characterize the large-scale movements of proteins, are investigated through the prism of Random Matrix Theory. Bulk universality is detected in the local spacing statistics of noise-dressed eigenmodes, which is well described by a Brody distribution with parameter $\beta\simeq 0.8$. This finding, supported by other consistent indicators, implies a novel quantitative criterion to single out the collective degrees of freedom of the protein from the majority of high-energy, localized vibrations.

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