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arxiv: 1307.5258 · v1 · pith:4TW7QXPVnew · submitted 2013-07-19 · ❄️ cond-mat.soft · physics.bio-ph· q-bio.BM

Multi-plectoneme phase of double-stranded DNA under torsion

classification ❄️ cond-mat.soft physics.bio-phq-bio.BM
keywords phasemodelmulti-plectonemetorqueunderbroadchaincharacterized
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We use the worm-like chain model to study supercoiling of DNA under tension and torque. The model reproduces experimental data for a broad range of forces, salt concentrations and contour lengths. We find a plane of first order phase transitions ending in a smeared out line of critical points, the multi-plectoneme phase, which is characterized by a fast twist mediated diffusion of plectonemes and a torque that rises after plectoneme formation with increasing linking number. The discovery of this new phase at the same time resolves the discrepancies between existing models and experiment.

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