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arxiv: 1409.5663 · v2 · pith:SOA7DU2Onew · submitted 2014-09-19 · ❄️ cond-mat.soft · physics.bio-ph· q-bio.BM

Effects of macromolecular crowding on the collapse of biopolymers

classification ❄️ cond-mat.soft physics.bio-phq-bio.BM
keywords overlinecoil-to-globulecrowdingexperimentsmacromolecularmathcalsizesmall
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Experiments show that macromolecular crowding modestly reduces the size of intrinsically disordered proteins (IDPs) even at volume fraction ($\phi$) similar to that in the cytosol whereas DNA undergoes a coil-to-globule transition at very small $\phi$. We show using a combination of scaling arguments and simulations that the polymer size $\overline{R}_g(\phi)$ depends on $x = \overline{R}_g(0)/D$ where $D$ is the $\phi$-dependent distance between the crowders. If $x\lesssim \mathcal{O}(1)$, there is only a small decrease in $\overline{R}_g(\phi)$ as $\phi$ increases. When $x\gg \mathcal{O}(1)$, a cooperative coil-to-globule transition is induced. Our theory quantitatively explains a number of experiments.

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