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arxiv: 1504.04939 · v2 · pith:4NQEB45Hnew · submitted 2015-04-20 · ⚛️ physics.chem-ph · cond-mat.mtrl-sci· q-bio.BM

Isotopic fractionation in proteins as a measure of hydrogen bond length

classification ⚛️ physics.chem-ph cond-mat.mtrl-sciq-bio.BM
keywords hydrogenbondsh-bondsbeenbonddeterminedeuteriumdonor-acceptor
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If a deuterated molecule containing strong intramolecular hydrogen bonds is placed in a hydrogenated solvent it may preferentially exchange deuterium for hydrogen. This preference is due to the difference between the vibrational zero-point energy for hydrogen and deuterium. It is found that the associated fractionation factor $\Phi$ is correlated with the strength of the intramolecular hydrogen bonds. This correlation has been used to determine the length of the H-bonds (donor-acceptor separation) in a diverse range of enzymes and has been argued to support the existence of short low-barrier H-bonds. Starting with a potential energy surface based on a simple diabatic state model for H-bonds we calculate $\Phi$ as a function of the proton donor-acceptor distance $R$. For numerical results, we use a parameterization of the model for symmetric O-H.... O bonds. We consider the relative contributions of the O-H stretch vibration, O-H bend vibrations (both in plane and out of plane), tunnelling splitting effects at finite temperature, and the secondary geometric isotope effect. We compare our total $\Phi$ as a function of $R$ with NMR experimental results for enzymes, and in particular with an empirical parametrisation $\Phi(R)$, used previously to determine bond lengths.

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