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arxiv: 1904.02503 · v1 · pith:BZ3U2M7Jnew · submitted 2019-04-04 · ❄️ cond-mat.mtrl-sci · physics.chem-ph

Importance of vdW and long-range exchange interactions to DFT-predicted docking energies between plumbagin and cyclodextrins

classification ❄️ cond-mat.mtrl-sci physics.chem-ph
keywords dockingenergiescyclodextrinsexchangelong-rangemethodsplumbaginsemi-empirical
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We calculated the docking energies between plumbagin and cyclodextrins, using density functional theory (DFT) with several functionals and some semi-empirical methods. Our DFT results revealed that GD3 dispersion force correction significantly improves the reliability of prediction. Also sufficient amount of long-range exchange is important to make it reliable further, agreeing with the previous work on argon dimer. In the semi-empirical methods, PM6 and PM7 qualitatively reproduce the stabilization by docking , yet under- and over-estimating the docking energies by ~10 kcal/mol, respectively.

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