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Visualising energy landscapes through manifold learning

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arxiv 2111.07843 v1 pith:TNDI3LMV submitted 2021-11-15 physics.comp-ph cond-mat.mtrl-sci

classification physics.comp-phcond-mat.mtrl-sci
keywords energylandscapesdimensionalityconfigurationfeatureslearningmanifoldsheap
verification ladder T0 review T1 audit T2 compute T3 formal

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Energy landscapes provide a conceptual framework for structure prediction, and a detailed understanding of their topological features is necessary to develop efficient methods for their exploration. The ability to visualise these surfaces is essential, but the high dimensionality of the corresponding configuration spaces makes this difficult. Here we present Stochastic Hyperspace Embedding and Projection (SHEAP), a method for energy landscape visualisation inspired by state-of-the-art algorithms for dimensionality reduction through manifold learning, such as t-SNE and UMAP. The performance of SHEAP is demonstrated through its application to the energy landscapes of Lennard-Jones clusters, solid-state carbon, and the quaternary system C+H+N+O. It produces meaningful and interpretable low-dimensional representations of these landscapes, reproducing well known topological features such as funnels, and providing fresh insight into their layouts. In particular, an intrinsic low dimensionality in the distribution of local minima across configuration space is revealed.

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