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Quantum Resources Required for Binding Affinity Calculations of Amyloid beta

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arxiv 2406.18744 v1 pith:BA5N3QVJ submitted 2024-06-26 quant-ph

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keywords bindingquantumaffinityamyloidbetacalculationsrequiredresources
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Amyloid beta, an intrinsically disordered protein, plays a seemingly important but not well-understood role in neurodegenerative diseases like Alzheimer's disease. A key feature of amyloid beta, which could lead to potential therapeutic intervention pathways, is its binding affinity to certain metal centers, like iron and copper. Numerically calculating such binding affinities is a computationally challenging task, involving strongly correlated metal centers. A key bottleneck in understanding the binding affinity is obtaining estimates of the ground state energy. Quantum computers have the potential to accelerate such calculations but it is important to understand the quantum resources required. In this work, we detail a computational workflow for binding affinity calculations for amyloid beta utilizing quantum algorithms, providing estimated quantum resources required, at both the logical and hardware level.

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Cited by 3 Pith papers

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  1. Impact of molecular orbital localization on quantum computational resources for Hamiltonian simulation: A benchmark study of hydrogen chain systems

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    For 1D hydrogen chains in a minimal basis, localized molecular orbitals with locality-based Hamiltonian truncation reduce Trotter-simulation gate-count scaling from polynomial to polylogarithmic in system size.

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    A new ground-state energy estimation benchmark rates SHCI, DMRG, and double-factorized QPE, reporting near-universal SHCI solvability from an ML extrapolation that its own empirical table only partially supports.

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