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arxiv: 2502.16443 · v2 · submitted 2025-02-23 · ❄️ cond-mat.soft · nlin.CD· physics.comp-ph· physics.flu-dyn

Turbulence-Induced Fluctuating Interfaces in Heterogeneously-Active Suspensions

Pith reviewed 2026-05-23 02:31 UTC · model grok-4.3

classification ❄️ cond-mat.soft nlin.CDphysics.comp-phphysics.flu-dyn
keywords bacterial suspensionsheterogeneous activityhydrodynamic interfacesturbulencejammed statesactive mattermixingLagrangian tracers
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The pith

Heterogeneous activity in bacterial suspensions generates fluctuating hydrodynamic interfaces between turbulent and jammed regions.

A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.

The paper examines how spatially varying activity affects flows in a model of dense bacterial suspensions using fixed, simple patterns. It finds that the bacterial velocity field develops hydrodynamic interfaces that separate regions of localized turbulence from surrounding jammed, frictional areas. These interfaces display intermittent and multiscale fluctuations. Heterogeneity also changes how tracers mix by altering their residence times. The work indicates that natural heterogeneities can lead active flows to more complex states than uniform cases.

Core claim

In a hydrodynamical model of dense bacterial suspensions with quenched heterogeneous activity patterns, the evolution of the bacterial velocity field produces hydrodynamic interfaces that separate spatially localized turbulence from jammed frictional surroundings. These interfaces are characterized by intermittent and multiscale fluctuations, and the activity heterogeneity affects mixing as measured by the residence times of Lagrangian tracers.

What carries the argument

Hydrodynamic interfaces emerging from velocity field evolution under quenched activity patterning, which separate localized turbulence from jammed frictional surroundings.

Load-bearing premise

The chosen hydrodynamical model for dense bacterial suspensions with fixed-in-time activity patterns is sufficient to capture the relevant physics of real heterogeneous suspensions.

What would settle it

An experiment or simulation with heterogeneous activity in bacterial suspensions that fails to produce fluctuating interfaces separating turbulent zones from jammed regions would falsify the claim.

Figures

Figures reproduced from arXiv: 2502.16443 by Kunal Kumar, Samriddhi Sankar Ray, Siddhartha Mukherjee.

Figure 1
Figure 1. Figure 1: FIG. 1: (a) Representative snapshots of the vorticity field [PITH_FULL_IMAGE:figures/full_fig_p002_1.png] view at source ↗
Figure 2
Figure 2. Figure 2: FIG. 2: Time averaged kinetic energy [PITH_FULL_IMAGE:figures/full_fig_p003_2.png] view at source ↗
Figure 3
Figure 3. Figure 3: FIG. 3: (a) The contour [PITH_FULL_IMAGE:figures/full_fig_p005_3.png] view at source ↗
Figure 4
Figure 4. Figure 4: FIG. 4: (a) A snapshot of the vorticity field [PITH_FULL_IMAGE:figures/full_fig_p007_4.png] view at source ↗
read the original abstract

We investigate the effects of heterogeneous (spatially varying) activity in a hydrodynamical model for dense bacterial suspensions, confining ourselves to experimentally realizable, simple, quenched, activity patterns. We show that the evolution of the bacterial velocity field under such activity patterning leads to the emergence of hydrodynamic interfaces separating spatially localized turbulence from jammed frictional surroundings. We characterise the intermittent and multiscale fluctuations of this interface and also investigate how heterogeneity influences mixing via the residence times of Lagrangian tracers. This work reveals how naturally occurring heterogeneities could decisively steer active flows into more complex configurations than those typically studied, opening up parallels to droplet dynamics, front propagation and turbulent mixing layers.

Editorial analysis

A structured set of objections, weighed in public.

Desk editor's note, referee report, simulated authors' rebuttal, and a circularity audit. Tearing a paper down is the easy half of reading it; the pith above is the substance, this is the friction.

Referee Report

3 major / 3 minor

Summary. The manuscript investigates the effects of spatially heterogeneous but time-quenched activity patterns within a hydrodynamic model of dense bacterial suspensions. It reports that the evolution of the bacterial velocity field produces fluctuating hydrodynamic interfaces separating localized turbulent regions from jammed frictional surroundings. The work characterizes the intermittent, multiscale statistics of these interfaces and examines their consequences for mixing through the residence-time statistics of Lagrangian tracers. The central claim is that such experimentally realizable heterogeneities can steer active flows into configurations more complex than those in homogeneous systems, with suggested parallels to droplet dynamics and turbulent mixing layers.

Significance. If the reported interfaces and fluctuation statistics are robust, the result would be significant for understanding how natural spatial heterogeneities control the structure and transport properties of active turbulence. The restriction to simple, quenched patterns that are experimentally realizable is a constructive choice that keeps the study focused and potentially testable. The Lagrangian mixing analysis adds a practical dimension. However, the significance is tempered by the absence of direct validation against either experiments or self-consistent (time-evolving) activity fields.

major comments (3)
  1. [§3] §3 (Model and activity patterning): The emergence of the hydrodynamic interfaces is demonstrated exclusively for quenched (fixed-in-time) activity fields. No auxiliary simulations with slowly varying or self-consistent activity are presented to test whether the interface formation and its fluctuation spectrum survive when the activity pattern is allowed to evolve, which is required to establish that the reported interfaces are not an artifact of the quenching approximation.
  2. [§5] §5 (Lagrangian mixing): The residence-time distributions used to quantify mixing are shown for a single realization of the quenched pattern. Without ensemble averaging over multiple independent activity patterns or reported error bars on the residence-time statistics, it is not possible to assess the statistical significance of the claimed influence of heterogeneity on mixing.
  3. [§2] §2 (Hydrodynamic model): The continuum equations are stated without a direct comparison to experimental velocity statistics or interface widths in heterogeneous bacterial suspensions. Because the central claim rests on the model faithfully capturing steric, frictional, and polarity dynamics at the relevant scales, a quantitative benchmark against existing experimental data for even one heterogeneous pattern is needed to support the extrapolation to real suspensions.
minor comments (3)
  1. [Figure 1] Figure 1: the color bar for the activity field is not labeled with units or the precise functional form used to generate the pattern.
  2. [§4] Notation: the symbol for the interface position is introduced without an explicit definition in the text preceding the first use in §4.
  3. [Discussion] References: several recent experimental papers on heterogeneous active suspensions are cited only in passing; a short dedicated paragraph comparing the present quenched-pattern results to those experiments would improve context.

Simulated Author's Rebuttal

3 responses · 0 unresolved

We thank the referee for their constructive comments. Our study is deliberately restricted to quenched activity patterns, as stated in the abstract and introduction, to examine experimentally realizable heterogeneities. We respond point-by-point to the major comments below.

read point-by-point responses
  1. Referee: [§3] §3 (Model and activity patterning): The emergence of the hydrodynamic interfaces is demonstrated exclusively for quenched (fixed-in-time) activity fields. No auxiliary simulations with slowly varying or self-consistent activity are presented to test whether the interface formation and its fluctuation spectrum survive when the activity pattern is allowed to evolve, which is required to establish that the reported interfaces are not an artifact of the quenching approximation.

    Authors: The manuscript explicitly confines the analysis to quenched patterns because these are simple and experimentally realizable, allowing isolation of spatial heterogeneity effects on the velocity field. The interfaces emerge from the hydrodynamic evolution under fixed activity; we make no claim about persistence under dynamic activity. Adding self-consistent simulations would require a substantially different model and lies outside the stated scope of the work. revision: no

  2. Referee: [§5] §5 (Lagrangian mixing): The residence-time distributions used to quantify mixing are shown for a single realization of the quenched pattern. Without ensemble averaging over multiple independent activity patterns or reported error bars on the residence-time statistics, it is not possible to assess the statistical significance of the claimed influence of heterogeneity on mixing.

    Authors: The residence-time results illustrate the qualitative effect of heterogeneity for a representative quenched pattern. We agree that ensemble statistics over multiple patterns would strengthen the quantitative claims. We will attempt to add results from additional independent realizations together with error bars if the computational data can be generated within the revision timeframe. revision: partial

  3. Referee: [§2] §2 (Hydrodynamic model): The continuum equations are stated without a direct comparison to experimental velocity statistics or interface widths in heterogeneous bacterial suspensions. Because the central claim rests on the model faithfully capturing steric, frictional, and polarity dynamics at the relevant scales, a quantitative benchmark against existing experimental data for even one heterogeneous pattern is needed to support the extrapolation to real suspensions.

    Authors: The continuum model is the standard hydrodynamic description used in prior literature on dense bacterial suspensions, with parameters chosen to lie within experimentally reported ranges. Direct quantitative benchmarks against heterogeneous experimental data are not included because such targeted data for quenched patterns remain limited. The work is positioned as a theoretical exploration of realizable heterogeneities rather than a direct experimental validation study. revision: no

Circularity Check

0 steps flagged

No circularity; results are direct outputs of numerical integration

full rationale

The paper reports outcomes from direct numerical simulations of a standard hydrodynamical model (with quenched activity patterns) rather than any derivation that reduces the target quantities (interface fluctuations, residence times) to fitted parameters or self-referential definitions. No equations are presented that equate a prediction to its own input by construction, and no self-citation chain is invoked as the sole justification for the central claim. The simulation itself constitutes an independent computation whose outputs are not forced by the reported statistics.

Axiom & Free-Parameter Ledger

0 free parameters · 0 axioms · 0 invented entities

Abstract-only review supplies no explicit free parameters, axioms, or invented entities; the hydrodynamical model itself is treated as given from prior literature.

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Works this paper leans on

93 extracted references · 93 canonical work pages

  1. [1]

    M. C. Marchetti, J.-F. Joanny, S. Ramaswamy, T. B. Liverpool, J. Prost, M. Rao, and R. A. Simha, Reviews of modern physics 85, 1143 (2013)

  2. [2]

    Be’er and G

    A. Be’er and G. Ariel, Movement ecology 7, 1 (2019)

  3. [3]

    I. S. Aranson, Reports on Progress in Physics 85, 076601 (2022)

  4. [4]

    Toner and Y

    J. Toner and Y. Tu, Physical review E 58, 4828 (1998)

  5. [5]

    Toner, Y

    J. Toner, Y. Tu, and S. Ramaswamy, Annals of Physics 318, 170 (2005)

  6. [6]

    Kumar, H

    N. Kumar, H. Soni, S. Ramaswamy, and A. Sood, Nature communications 5, 4688 (2014)

  7. [7]

    Nishiguchi and M

    D. Nishiguchi and M. Sano, Physical Review E 92, 052309 (2015)

  8. [8]

    Ginot, I

    F. Ginot, I. Theurkauff, F. Detcheverry, C. Ybert, and C. Cottin-Bizonne, Nature communications 9, 696 (2018)

  9. [9]

    Sanchez, D

    T. Sanchez, D. T. Chen, S. J. DeCamp, M. Heymann, and Z. Dogic, Nature 491, 431 (2012)

  10. [10]

    H. H. Wensink, J. Dunkel, S. Heidenreich, K. Drescher, R. E. Goldstein, H. L¨ owen, and J. M. Yeomans, Pro- ceedings of the national academy of sciences 109, 14308 (2012)

  11. [11]

    Dunkel, S

    J. Dunkel, S. Heidenreich, K. Drescher, H. H. Wensink, M. B¨ ar, and R. E. Goldstein, Physical review letters110, 228102 (2013)

  12. [12]

    Doostmohammadi, M

    A. Doostmohammadi, M. F. Adamer, S. P. Thampi, and J. M. Yeomans, Nature communications 7, 10557 (2016)

  13. [13]

    Doostmohammadi, T

    A. Doostmohammadi, T. N. Shendruk, K. Thijssen, and J. M. Yeomans, Nature communications 8, 15326 (2017)

  14. [14]

    C. Chen, S. Liu, X.-q. Shi, H. Chat´ e, and Y. Wu, Nature 542, 210 (2017)

  15. [15]

    Mart´ ınez-Prat, J

    B. Mart´ ınez-Prat, J. Ign´ es-Mullol, J. Casademunt, and F. Sagu´ es, Nature physics15, 362 (2019)

  16. [16]

    S. Liu, S. Shankar, M. C. Marchetti, and Y. Wu, Nature 590, 80 (2021)

  17. [17]

    Alert, J

    R. Alert, J. Casademunt, and J.-F. Joanny, Annual Re- view of Condensed Matter Physics 13, 143 (2022)

  18. [18]

    James, W

    M. James, W. J. Bos, and M. Wilczek, Physical Review Fluids 3, 061101 (2018)

  19. [19]

    James and M

    M. James and M. Wilczek, The European Physical Jour- nal E 41, 1 (2018)

  20. [20]

    James, D

    M. James, D. A. Suchla, J. Dunkel, and M. Wilczek, Nature communications 12, 5630 (2021)

  21. [21]

    Mukherjee, R

    S. Mukherjee, R. K. Singh, M. James, and S. S. Ray, Nature Physics 19, 891 (2023)

  22. [22]

    Bratanov, F

    V. Bratanov, F. Jenko, and E. Frey, Proceedings of the National Academy of Sciences 112, 15048 (2015)

  23. [23]

    CP and A

    S. CP and A. Joy, Physical Review Fluids 5, 024302 (2020)

  24. [24]

    Rorai, F

    C. Rorai, F. Toschi, and I. Pagonabarraga, Physical Re- view Letters 129, 218001 (2022)

  25. [25]

    K. V. Kiran, K. Kumar, A. Gupta, R. Pandit, and S. S. Ray, arXiv preprint arXiv:2408.06950 (2024)

  26. [26]

    Ariel, A

    G. Ariel, A. Rabani, S. Benisty, J. D. Partridge, R. M. Harshey, and A. Be’Er, Nature communications 6, 8396 (2015)

  27. [27]

    Mukherjee, R

    S. Mukherjee, R. K. Singh, M. James, and S. S. Ray, Physical Review Letters 127, 118001 (2021)

  28. [28]

    Gautam, H

    D. Gautam, H. Meena, S. Matheshwaran, and S. Chan- dran, Physical Review E 110, L012601 (2024)

  29. [29]

    R. K. Singh, S. Mukherjee, and S. S. Ray, Physical Re- view Fluids 7, 033101 (2022)

  30. [30]

    Wioland, E

    H. Wioland, E. Lushi, and R. E. Goldstein, New Journal of Physics 18, 075002 (2016)

  31. [31]

    K.-T. Wu, J. B. Hishamunda, D. T. Chen, S. J. De- Camp, Y.-W. Chang, A. Fern´ andez-Nieves, S. Fraden, and Z. Dogic, Science 355, eaal1979 (2017)

  32. [32]

    Chandragiri, A

    S. Chandragiri, A. Doostmohammadi, J. M. Yeomans, and S. P. Thampi, Physical Review Letters 125, 148002 (2020)

  33. [33]

    Nishiguchi, S

    D. Nishiguchi, S. Shiratani, K. A. Takeuchi, and I. S. Aranson, arXiv preprint arXiv:2407.05269 (2024)

  34. [34]

    S. P. Thampi, R. Golestanian, and J. M. Yeomans, Phys- ical Review E 90, 062307 (2014)

  35. [35]

    W. D. Hoff, M. A. van der Horst, C. B. Nudel, and K. J. Hellingwerf, Chemotaxis: Methods and Protocols pp. 25– 49 (2009)

  36. [36]

    Wilde and C

    A. Wilde and C. W. Mullineaux, FEMS microbiology reviews 41, 900 (2017)

  37. [37]

    J. Yang, P. E. Arratia, A. E. Patteson, and A. Gopinath, Journal of the Royal Society Interface 16, 20180960 (2019)

  38. [38]

    Thar and M

    R. Thar and M. K¨ uhl, Proceedings of the National Academy of Sciences 100, 5748 (2003)

  39. [39]

    Colin, B

    R. Colin, B. Ni, L. Laganenka, and V. Sourjik, FEMS microbiology reviews 45, fuab038 (2021)

  40. [40]

    A. P. Petroff, X.-L. Wu, and A. Libchaber, Physical re- 10 view letters 114, 158102 (2015)

  41. [41]

    Natan, V

    G. Natan, V. M. Worlitzer, G. Ariel, and A. Be’er, Sci- entific Reports 12, 16500 (2022)

  42. [42]

    Engelhardt, D

    I. Engelhardt, D. Patko, Y. Liu, M. Mimault, G. de Las Heras Martinez, T. George, M. MacDonald, M. Ptash- nyk, T. Sukhodub, N. Stanley-Wall, et al., The ISME Journal 16, 2337 (2022)

  43. [43]

    Nishiguchi, I

    D. Nishiguchi, I. S. Aranson, A. Snezhko, and A. Sokolov, Nature communications 9, 4486 (2018)

  44. [44]

    Reinken, D

    H. Reinken, D. Nishiguchi, S. Heidenreich, A. Sokolov, M. B¨ ar, S. H. Klapp, and I. S. Aranson, Communications Physics 3, 76 (2020)

  45. [45]

    Reinken, S

    H. Reinken, S. Heidenreich, M. B¨ ar, and S. H. Klapp, Physical Review Letters 128, 048004 (2022)

  46. [46]

    Shankar and M

    S. Shankar and M. C. Marchetti, Physical Review X 9, 041047 (2019)

  47. [47]

    Palacci, S

    J. Palacci, S. Sacanna, A. P. Steinberg, D. J. Pine, and P. M. Chaikin, Science 339, 936 (2013)

  48. [48]

    Schuppler, F

    M. Schuppler, F. C. Keber, M. Kr¨ oger, and A. R. Bausch, Nature communications 7, 13120 (2016)

  49. [49]

    T. D. Ross, H. J. Lee, Z. Qu, R. A. Banks, R. Phillips, and M. Thomson, Nature 572, 224 (2019)

  50. [50]

    Zhang, S

    R. Zhang, S. A. Redford, P. V. Ruijgrok, N. Kumar, A. Mozaffari, S. Zemsky, A. R. Dinner, V. Vitelli, Z. Bryant, M. L. Gardel, et al., Nature materials 20, 875 (2021)

  51. [51]

    Zhang, A

    R. Zhang, A. Mozaffari, and J. J. de Pablo, Nature Re- views Materials 6, 437 (2021)

  52. [52]

    Shankar, A

    S. Shankar, A. Souslov, M. J. Bowick, M. C. Marchetti, and V. Vitelli, Nature Reviews Physics 4, 380 (2022)

  53. [53]

    J. Arlt, V. A. Martinez, A. Dawson, T. Pilizota, and W. C. Poon, Nature communications 9, 768 (2018)

  54. [54]

    Frangipane, D

    G. Frangipane, D. Dell’Arciprete, S. Petracchini, C. Maggi, F. Saglimbeni, S. Bianchi, G. Vizsnyiczai, M. L. Bernardini, and R. Di Leonardo, Elife 7, e36608 (2018)

  55. [55]

    J. Arlt, V. A. Martinez, A. Dawson, T. Pilizota, and W. C. Poon, Nature communications 10, 2321 (2019)

  56. [56]

    Made with Processing [91–93]

    See animation showing the development of the vor- ticity field for an activity quench over a circu- lar geometry https://www.youtube.com/watch?v=VJJg_ SMyfw8, along with a composite comparison of the emerging interface https://www.youtube.com/shorts/ a1vjBuiQSLM. Made with Processing [91–93]

  57. [57]

    See https://youtube.com/shorts/AIcsM2GP3d4 for an animation showing the formation of a large vortex, simi- lar to what is obtained for highly active turbulence under circular confinement

  58. [58]

    Puggioni, G

    L. Puggioni, G. Boffetta, and S. Musacchio, Physical Re- view E 106, 055103 (2022)

  59. [59]

    See https://www.youtube.com/shorts/l6AVRfRtIyo for an animation showing the evolution of the interface sep- arating the highly active flow from a region low activity

  60. [60]

    Pumir, Physics of Fluids 6, 2071 (1994)

    A. Pumir, Physics of Fluids 6, 2071 (1994)

  61. [61]

    N. Cao, S. Chen, and G. D. Doolen, Physics of Fluids 11, 2235 (1999)

  62. [62]

    Boffetta and R

    G. Boffetta and R. E. Ecke, Annual review of fluid me- chanics 44, 427 (2012)

  63. [63]

    Frisch, Turbulence: the legacy of AN Kolmogorov (Cambridge university press, 1995)

    U. Frisch, Turbulence: the legacy of AN Kolmogorov (Cambridge university press, 1995)

  64. [64]

    Meneveau and K

    C. Meneveau and K. Sreenivasan, Physical review letters 59, 1424 (1987)

  65. [65]

    Meneveau and K

    C. Meneveau and K. Sreenivasan, Journal of Fluid Me- chanics 224, 429 (1991)

  66. [66]

    Mukherjee, S

    S. Mukherjee, S. D. Murugan, R. Mukherjee, and S. S. Ray, Phys. Rev. Lett. 132, 184002 (2024)

  67. [67]

    Grassberger and I

    P. Grassberger and I. Procaccia, Physical review letters 50, 346 (1983)

  68. [68]

    See https://www.youtube.com/shorts/AzAhfmAAwyc for an animation showing the evolution of the vorticity field for a striped activity pattern

  69. [69]

    N. Pal, P. Perlekar, A. Gupta, and R. Pandit, Physical Review E 93, 063115 (2016)

  70. [70]

    N. B. Padhan and R. Pandit, Physical Review Research 5, L032013 (2023)

  71. [71]

    Perlekar, S

    P. Perlekar, S. S. Ray, D. Mitra, and R. Pandit, Phys. Rev. Lett. 106, 054501 (2011)

  72. [72]

    Bhatnagar, A

    A. Bhatnagar, A. Gupta, D. Mitra, R. Pandit, and P. Perlekar, Phys. Rev. E 94, 053119 (2016)

  73. [73]

    Manoharan, S

    A. Manoharan, S. CP, and A. Joy, Phys. Rev. E 108, L062602 (2023)

  74. [74]

    Puggioni, G

    L. Puggioni, G. Boffetta, and S. Musacchio, Physical Re- view E 107, 055107 (2023)

  75. [75]

    Alexakis, Journal of Fluid Mechanics 977, R1 (2023)

    A. Alexakis, Journal of Fluid Mechanics 977, R1 (2023)

  76. [76]

    Heus and H

    T. Heus and H. J. Jonker, Journal of the Atmospheric Sciences 65, 1003 (2008)

  77. [77]

    Westerweel, C

    J. Westerweel, C. Fukushima, J. M. Pedersen, and J. C. Hunt, Journal of Fluid Mechanics 631, 199 (2009)

  78. [78]

    Chauhan, J

    K. Chauhan, J. Philip, C. M. De Silva, N. Hutchins, and I. Marusic, Journal of Fluid Mechanics 742, 119 (2014)

  79. [79]

    Watanabe, Y

    T. Watanabe, Y. Sakai, K. Nagata, Y. Ito, and T. Hayase, Physics of Fluids 27 (2015)

  80. [80]

    Borrell and J

    G. Borrell and J. Jim´ enez, Journal of Fluid Mechanics 801, 554 (2016)

Showing first 80 references.