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arxiv: chem-ph/9411005 · v2 · submitted 1994-11-08 · chem-ph · cond-mat· hep-lat· physics.chem-ph

Comparative Study of Multicanonical and Simulated Annealing Algorithms in the Protein Folding Problem

classification chem-ph cond-mathep-latphysics.chem-ph
keywords annealingsimulatedenergymethodmulticanonicalsearchsystemalgorithms
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We compare a few variants of the recently proposed multicanonical method with the well known simulated annealing for the effectiveness in search of the energy global minimum of a biomolecular system. For this we study in detail Met-enkephalin, one of the simplest peptides. We show that the new method not only outperforms simulated annealing in the search of the energy groundstate but also provides more statistical-mechanical information about the system.

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