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arxiv: cond-mat/0211468 · v1 · submitted 2002-11-21 · ❄️ cond-mat.stat-mech · cond-mat.soft· q-bio

Entropy loss in long-distance DNA looping

classification ❄️ cond-mat.stat-mech cond-mat.softq-bio
keywords entropylossloopingallowanalyticalapproachbecomebond
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The entropy loss due to the formation of one or multiple loops in circular and linear DNA chains is calculated from a scaling approach in the limit of long chain segments. The analytical results allow to obtain a fast estimate for the entropy loss for a given configuration. Numerical values obtained for some examples suggest that the entropy loss encountered in loop closure in typical genetic switches may become a relevant factor which has to be overcome by the released bond energy between the looping contact sites.

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