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arxiv: cond-mat/0402551 · v1 · submitted 2004-02-23 · ❄️ cond-mat.soft · cond-mat.stat-mech· q-bio.TO

Pacman percolation: a model for enzyme gel degradation

classification ❄️ cond-mat.soft cond-mat.stat-mechq-bio.TO
keywords enzymemodelpercolationdegradationrandomagreementbetabonds
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We study a model for the gel degradation by an enzyme, where the gel is schematized as a cubic lattice, and the enzyme as a random walker, that cuts the bonds over which it passes. The model undergoes a (reverse) percolation transition, which for low density of enzymes falls in a universality class different from random percolation. In particular we have measured a gel fraction critical exponent beta=1.0+-0.1, in excellent agreement with experiments made on the real system.

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