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arxiv: 0706.1683 · v1 · submitted 2007-06-12 · ⚛️ physics.bio-ph · physics.atm-clus

Simple Combined Model for Nonlinear Excitations in DNA

classification ⚛️ physics.bio-ph physics.atm-clus
keywords modelconstantbasescitecombinedcouplingsimpleagreement
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We propose a new simple model for DNA denaturation bases on the pendulum model of Englander\cite{A1} and the microscopic model of Peyrard {\it et al.},\cite{A3} so called "combined model". The main parameters of our model are: the coupling constant $k$ along each strand, the mean stretching $y^\ast$ of the hydrogen bonds, the ratio of the damping constant and driven force $\gamma/F$. We show that both the length $L$ of unpaired bases and the velocity $v$ of kinks depend on not only the coupling constant $k$ but also the temperature $T$. Our results are in good agreement with previous works.

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