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Searching for feasible stationary states in reaction networks by solving a Boolean constraint satisfaction problem

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arxiv 1310.5637 v1 pith:36ZTPJG6 submitted 2013-10-21 q-bio.MN cond-mat.dis-nncond-mat.stat-mech

Searching for feasible stationary states in reaction networks by solving a Boolean constraint satisfaction problem

classification q-bio.MN cond-mat.dis-nncond-mat.stat-mech
keywords cspsnetworkexpansionfeasiblenetworksphasereactionstates
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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We analyze the solutions, on single network instances, of a recently introduced class of constraint-satisfaction problems (CSPs), describing feasible steady states of chemical reaction networks. First, we show that the CSPs generalize the scheme known as Network Expansion, which is recovered in a specific limit. Next, a full statistical mechanics characterization (including the phase diagram and a discussion of physical origin of the phase transitions) for Network Expansion is obtained. Finally, we provide a message-passing algorithm to solve the original CSPs in the most general form.

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