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CORTEX: Large-Scale Brain Simulator Utilizing Indegree Sub-Graph Decomposition on Fugaku Supercomputer

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arxiv 2406.03762 v1 pith:5HU7TP54 submitted 2024-06-06 cs.DC q-bio.NC

classification cs.DCq-bio.NC
keywords braincortexdecompositionfugakuindegreelarge-scaleparallelperformance
verification ladder T0 review T1 audit T2 compute T3 formal
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We introduce CORTEX, an algorithmic framework designed for large-scale brain simulation. Leveraging the computational capacity of the Fugaku Supercomputer, CORTEX maximizes available problem size and processing performance. Our primary innovation, Indegree Sub-Graph Decomposition, along with a suite of parallel algorithms, facilitates efficient domain decomposition by segmenting the global graph structure into smaller, identically structured sub-graphs. This segmentation allows for parallel processing of synaptic interactions without inter-process dependencies, effectively eliminating data racing at the thread level without necessitating mutexes or atomic operations. Additionally, this strategy enhances the overlap of communication and computation. Benchmark tests conducted on spiking neural networks, characterized by biological parameters, have demonstrated significant enhancements in both problem size and simulation performance, surpassing the capabilities of the current leading open-source solution, the NEST Simulator. Our work offers a powerful new tool for the field of neuromorphic computing and understanding brain function.

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Cited by 1 Pith paper

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score.

  1. Exploiting network topology in brain-scale simulations of spiking neural networks

    cs.DC 2026-02 conditional novelty 6.0 of 10

    In distributed spiking-network simulations, synchronization waiting time—not raw communication—is the bottleneck, and area-aware mapping that communicates long-range spikes less often reduces runtime by up to 42%.

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