Paper Citation Record · LEDGER

ProteinBench: A Holistic Evaluation of Protein Foundation Models

As of 9 August 2026, this Paper Citation Record lists 0 of 0 outbound references and 9 inbound Pith citation observations for arXiv:2409.06744.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2409.06744 v2

Coverage vector

measured 0 of 0 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links

measured 9 of 9 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-09T06:31:02.800959+00:00

measured 9 of 9 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-08-07T18:32:14.805622Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-05-14T22:13:04.861250Z

Reference resolution

0 of 0 outbound references displayed

verified exact0
verified fuzzy0
unresolved0
parse uncertain0
malformed identifier0
metadata mismatch0

External citation measurements

No source-named external measurement is stored.

Outbound references

No outbound reference observations are available for this paper version.

Pith citing papers

Observation 35800349-4086-47c0-ac8a-be7ea51a6535 · inbound

AffinityFlow: Guided Flows for Antibody Affinity Maturation cites this paper.

AffinityFlow: Guided Flows for Antibody Affinity Maturation ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 72

Resolution: unresolved; no resolver link, observed 2026-08-07T18:32:14.805622Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 96a369ce-9109-450a-ad8b-ed14dbd6a420 · inbound

Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling cites this paper.

Designing Cyclic Peptides via Harmonic SDE with Atom-Bond Modeling ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 106

Resolution: unresolved; no resolver link, observed 2026-08-07T13:40:15.571263Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 34c1f102-df3a-4f80-9188-fabbd9e0c52d · inbound

Improving Protein Sequence Design through Designability Preference Optimization cites this paper.

Improving Protein Sequence Design through Designability Preference Optimization ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 19

Resolution: unresolved; no resolver link, observed 2026-08-07T12:12:09.974745Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation d35937c4-0bad-4095-a247-c503a62b7c3e · inbound

PFMBench: Protein Foundation Model Benchmark cites this paper.

PFMBench: Protein Foundation Model Benchmark ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 75

Resolution: unresolved; no resolver link, observed 2026-08-07T11:59:27.806358Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation 00bc3cf5-6f28-4da6-834d-4b57b5ef443d · inbound

Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design cites this paper.

Protein-SE(3): Benchmarking SE(3)-based Generative Models for Protein Structure Design ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 34

Resolution: unresolved; no resolver link, observed 2026-08-06T13:45:53.860111Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.

Observation e144ed2c-1e18-4554-a833-7667c1efe55f · inbound

Proteo-R1: Reasoning Foundation Models for De Novo Protein Design cites this paper.

Proteo-R1: Reasoning Foundation Models for De Novo Protein Design ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 22

Resolution: verified exact; arxiv_id, observed 2026-05-11T15:36:13.326182Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation a06a7e7e-d107-4d01-a735-244c7dbe659b · inbound

VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design cites this paper.

VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 94

Resolution: verified exact; arxiv_id, observed 2026-05-13T01:52:06.371012Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation e0a6d09f-028a-4892-87ac-3557afe07028 · inbound

VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design cites this paper.

VibeProteinBench: An Evaluation Benchmark for Language-interfaced Vibe Protein Design ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 94

Resolution: verified exact; arxiv_id, observed 2026-05-14T22:13:04.865213Z

Source-reported events for the cited work

No event found in the named queried sources as of 2026-08-09T06:31:02.800959+00:00.

Observation 982728be-889c-4ec5-b2c2-60abdef7d485 · inbound

Antigen-specific Antibody Multi-modal Foundation Model for Functional Antibody Design cites this paper.

Antigen-specific Antibody Multi-modal Foundation Model for Functional Antibody Design ProteinBench: A Holistic Evaluation of Protein Foundation Models

Reference 69

Resolution: unresolved; no resolver link, observed 2026-08-01T10:59:18.931795Z

Source-reported events for the cited work

Unavailable: canonical work link unavailable.