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Paper Citation Record · LEDGER

CAKL: Commutative algebra k-mer learning of genomics

As of 8 August 2026, this Paper Citation Record lists 36 of 36 outbound references and 2 inbound Pith citation observations for arXiv:2508.09406.

A citation records a reference. It does not transfer a finding from one paper to another.

pith.paper-citation-record.v1
2508.09406 v1

Coverage vector

measured 36 of 36 reference resolution

Typed states for the displayed outbound observations.

Source: paper_references, paper_reference_links, observed 2026-08-05T21:11:53.288674Z

measured 38 of 38 standing notices

One-hop event checks from named stored sources.

Source: scholarly_work_events, retraction_status_cache, observed 2026-08-08T06:32:00.761636+00:00

measured 2 of 2 inbound itemization

Pith citing papers itemized under the disclosed page cap.

Source: paper_references, paper_reference_links, observed 2026-07-02T01:43:10.447620Z

measured 0 of 1 external citation measurements

A source-named dated measurement, never combined with another source.

Source: arxiv_reference, observed 2026-07-02T16:27:08.906241Z

Reference resolution

36 of 36 outbound references displayed

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External citation measurements

No source-named external measurement is stored.

Outbound references

Observation dd87eb63-5f6d-430d-b617-45bcd0416a27 · outbound

This paper cites Comparative genomics of the eukaryotes.

CAKL: Commutative algebra k-mer learning of genomics Comparative genomics of the eukaryotes

Reference 1

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Observation ae68f6a7-eb6c-4151-bdf8-eb7c0d8019ff · outbound

This paper cites VISTA: computational tools for comparative genomics.

CAKL: Commutative algebra k-mer learning of genomics VISTA: computational tools for comparative genomics

Reference 2

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Observation d91023c4-5ef6-421f-93cd-1a554e9f6f1a · outbound

This paper cites Phylogenetic analysis in molecular evolutionary genetics.

CAKL: Commutative algebra k-mer learning of genomics Phylogenetic analysis in molecular evolutionary genetics

Reference 3

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Observation 2c7a5135-f0a0-4354-890e-89b7aaa37683 · outbound

This paper cites Bellgard, Takeshi Itoh, Hidemi Watanabe, Tadashi Imanishi, and Takashi Gojobori.

CAKL: Commutative algebra k-mer learning of genomics Bellgard, Takeshi Itoh, Hidemi Watanabe, Tadashi Imanishi, and Takashi Gojobori

Reference 4

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Observation 9a25f1d8-cc25-4f51-8969-39a5997258ad · outbound

This paper cites Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes S¨ oding, and et al.

CAKL: Commutative algebra k-mer learning of genomics Gibson, Kevin Karplus, Weizhong Li, Rodrigo Lopez, Hamish McWilliam, Michael Remmert, Johannes S¨ oding, and et al

Reference 5

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This paper cites Standley.

CAKL: Commutative algebra k-mer learning of genomics Standley

Reference 6

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Observation d1b892d7-e41e-47cd-a824-90e657f949e2 · outbound

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CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 7

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Observation 9935dd4b-b436-4d8d-a9d9-2e6e49b12049 · outbound

This paper cites Topological data analysis identifies emerging adaptive mutations in sars-cov-2.

CAKL: Commutative algebra k-mer learning of genomics Topological data analysis identifies emerging adaptive mutations in sars-cov-2

Reference 8

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Observation bb5fb97d-fa89-40b4-9960-dfff900c6929 · outbound

This paper cites Maranas, Peter K.

CAKL: Commutative algebra k-mer learning of genomics Maranas, Peter K

Reference 9

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Observation 24655d44-e3af-4c44-b2bd-eb8157dc300f · outbound

This paper cites Editorial: Alignment-free methods in computational biology.

CAKL: Commutative algebra k-mer learning of genomics Editorial: Alignment-free methods in computational biology

Reference 10

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Observation 00a7e132-c590-41c7-87d4-15843eb506fc · outbound

This paper cites Karlowski.

CAKL: Commutative algebra k-mer learning of genomics Karlowski

Reference 11

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Observation 08b66bf9-6c13-4d1f-84a0-df5791866552 · outbound

This paper cites Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis.

CAKL: Commutative algebra k-mer learning of genomics Alignment-free genetic sequence comparisons: a review of recent approaches by word analysis

Reference 12

Resolution
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Observation fe91a21a-fd75-48d2-bbe8-8e97adc64d9d · outbound

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CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 13

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Observation 7bfba838-209c-49e1-8d45-d3335de799a7 · outbound

This paper cites Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie R¨ ohling, Jae Jin Choi, Michael S.

CAKL: Commutative algebra k-mer learning of genomics Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie R¨ ohling, Jae Jin Choi, Michael S

Reference 14

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Observation aff341a5-0f45-4a84-8c69-2d0c1468b8fa · outbound

This paper cites Edwin Blaisdell.

CAKL: Commutative algebra k-mer learning of genomics Edwin Blaisdell

Reference 15

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Observation ed499549-37e0-4bdd-a7e3-079a214df311 · outbound

This paper cites McIrvine.

CAKL: Commutative algebra k-mer learning of genomics McIrvine

Reference 16

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Observation a4041479-fe7c-4fdb-92bf-d687af31a4b7 · outbound

This paper cites Otu and Khalid Sayood.

CAKL: Commutative algebra k-mer learning of genomics Otu and Khalid Sayood

Reference 17

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This paper cites An Introduction to Kolmogorov Complexity and Its Applications , volume 3.

CAKL: Commutative algebra k-mer learning of genomics An Introduction to Kolmogorov Complexity and Its Applications , volume 3

Reference 18

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CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 19

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Observation 5d807059-1be8-40a0-8ebd-eed3a8d79c3e · outbound

This paper cites He, and Stephen S.-T.

CAKL: Commutative algebra k-mer learning of genomics He, and Stephen S.-T

Reference 20

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Observation 5e777352-9ef1-4d6b-9422-41792e22d279 · outbound

This paper cites Joel Jeffrey.

CAKL: Commutative algebra k-mer learning of genomics Joel Jeffrey

Reference 21

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CAKL: Commutative algebra k-mer learning of genomics Milestones in graphical bioinformatics

Reference 22

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Reference 23

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Reference 24

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This paper cites Alignment-free method for dna sequence clustering using fuzzy integral similarity.

CAKL: Commutative algebra k-mer learning of genomics Alignment-free method for dna sequence clustering using fuzzy integral similarity

Reference 25

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CAKL: Commutative algebra k-mer learning of genomics He, and Stephen S.-T

Reference 26

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Reference 27

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This paper cites Sims, Se-Ran Jun, Guohong A.

CAKL: Commutative algebra k-mer learning of genomics Sims, Se-Ran Jun, Guohong A

Reference 28

Resolution
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This paper cites Persistent stanley–reisner theory.

CAKL: Commutative algebra k-mer learning of genomics Persistent stanley–reisner theory

Reference 29

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Observation 1a314074-d258-45f6-8243-3f75e454df7f · outbound

This paper cites Revealing the Shape of Genome Space via K-mer Topology.

CAKL: Commutative algebra k-mer learning of genomics Revealing the Shape of Genome Space via K-mer Topology

Reference 30

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This paper cites an unresolved cited work.

CAKL: Commutative algebra k-mer learning of genomics Unresolved cited work

Reference 31

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Observation e0c64683-9294-4fee-a190-78c3d77a5b0c · outbound

This paper cites Statistical measures of dna sequence dissim- ilarity under markov chain models of base composition.

CAKL: Commutative algebra k-mer learning of genomics Statistical measures of dna sequence dissim- ilarity under markov chain models of base composition

Reference 32

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Observation d9e3853e-b50e-4feb-a0d3-316fe024237e · outbound

This paper cites The biological and clinical significance of emerging sars-cov-2 variants.

CAKL: Commutative algebra k-mer learning of genomics The biological and clinical significance of emerging sars-cov-2 variants

Reference 33

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Observation c8a7c076-b897-4d64-943c-cb5bb41dd400 · outbound

This paper cites Omicron ba.

CAKL: Commutative algebra k-mer learning of genomics Omicron ba

Reference 34

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Observation 3de2e2b7-e755-4883-9d6c-706ed5749691 · outbound

This paper cites Interactive tree of life (itol) v6: recent updates to the phylogenetic tree display and annotation tool.

CAKL: Commutative algebra k-mer learning of genomics Interactive tree of life (itol) v6: recent updates to the phylogenetic tree display and annotation tool

Reference 35

Resolution
verified fuzzy
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Source-reported events for the cited work

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Observation e0422880-12d5-491f-aa1c-06debe7da956 · outbound

This paper cites Topological Data Analysis and Topological Deep Learning Beyond Persistent Homology -- A Review.

CAKL: Commutative algebra k-mer learning of genomics Topological Data Analysis and Topological Deep Learning Beyond Persistent Homology -- A Review

Reference 36

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Observation 1f5263b2-6e0e-4f6d-aac6-4bbfbbf04469 · inbound

$p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences cites this paper.

$p$-adic Bi-Filtrations for Topological Machine Learning on Genomic Sequences CAKL: Commutative algebra k-mer learning of genomics

Reference 7

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Observation 297e1bbe-8b0f-46f9-9fbd-47acc8b203c6 · inbound

Commutative Algebra Learning for Protein Flexibility Analysis cites this paper.

Commutative Algebra Learning for Protein Flexibility Analysis CAKL: Commutative algebra k-mer learning of genomics

Reference 30

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