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Many-Shot In-Context Learning for Molecular Inverse Design

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arxiv 2407.19089 v1 pith:4DCCOEFV submitted 2024-07-26 cs.CL cs.AI

classification cs.CLcs.AI
keywords designmolecularlearningmethodcapabilitiesdataexperimentalfurther
verification ladder T0 review T1 audit T2 compute T3 formal
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Large Language Models (LLMs) have demonstrated great performance in few-shot In-Context Learning (ICL) for a variety of generative and discriminative chemical design tasks. The newly expanded context windows of LLMs can further improve ICL capabilities for molecular inverse design and lead optimization. To take full advantage of these capabilities we developed a new semi-supervised learning method that overcomes the lack of experimental data available for many-shot ICL. Our approach involves iterative inclusion of LLM generated molecules with high predicted performance, along with experimental data. We further integrated our method in a multi-modal LLM which allows for the interactive modification of generated molecular structures using text instructions. As we show, the new method greatly improves upon existing ICL methods for molecular design while being accessible and easy to use for scientists.

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Cited by 1 Pith paper

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  1. Towards Compute-Optimal Many-Shot In-Context Learning

    cs.CL 2025-07 conditional novelty 6.0 of 10

    Hybrid demonstration selection that adds 20 similar examples to a large cached random or k-means set matches or beats similarity-only selection at up to 10x lower estimated inference cost in many-shot ICL.

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