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arxiv: 0812.3335 · v1 · pith:4X5IFWTWnew · submitted 2008-12-17 · ⚛️ physics.chem-ph · physics.bio-ph

Anharmonic Vibrational Dynamics of DNA Oligomers

classification ⚛️ physics.chem-ph physics.bio-ph
keywords anharmoniccm-1couplingoligomersstretchingvibrationabsorbingabsorption
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Combining two-color infared pump-probe spectroscopy and anharmonic force field calculations we characterize the anharmonic coupling patterns between fingerprint modes and the hydrogen-bonded symmetric NH$_2$ stretching vibration in adenine-thymine dA$_{20}$-dT$_{20}$ DNA oligomers. Specifically, it is shown that the anharmonic coupling between the NH$_2$ bending and the CO stretching vibration, both absorbing around 1665 cm-1, can be used to assign the NH$_2$ fundamental transition at 3215 cm-1 despite the broad background absorption of water.

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