pith. sign in

arxiv: 1601.00478 · v1 · pith:66PYDLPMnew · submitted 2016-01-04 · ⚛️ physics.bio-ph · cond-mat.soft· q-bio.BM

Thermodynamics of amyloid formation and the role of intersheet interactions

classification ⚛️ physics.bio-ph cond-mat.softq-bio.BM
keywords amyloidstateformationgrowthinteractionsintersheetmodelobserved
0
0 comments X
read the original abstract

The self-assembly of proteins into $\beta$-sheet-rich amyloid fibrils has been observed to occur with sigmoidal kinetics, indicating that the system initially is trapped in a metastable state. Here, we use a minimal lattice-based model to explore the thermodynamic forces driving amyloid formation in a finite canonical ($NVT$) system. By means of generalized-ensemble Monte Carlo techniques and a semi-analytical method, the thermodynamic properties of this model are investigated for different sets of intersheet interaction parameters. When the interactions support lateral growth into multi-layered fibrillar structures, an evaporation/condensation transition is observed, between a supersaturated solution state and a thermodynamically distinct state where small and large fibril-like species exist in equilibrium. Intermediate-size aggregates are statistically suppressed. These properties do not hold if aggregate growth is one-dimensional.

This paper has not been read by Pith yet.

discussion (0)

Sign in with ORCID, Apple, or X to comment. Anyone can read and Pith papers without signing in.