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arxiv: 1103.5355 · v2 · pith:6PWTL2L3new · submitted 2011-03-28 · ❄️ cond-mat.stat-mech · physics.bio-ph· q-bio.CB

Chemotaxis When Bacteria Remember: Drift versus Diffusion

classification ❄️ cond-mat.stat-mech physics.bio-phq-bio.CB
keywords chemotaxisbacteriadriftfavorableaccumulationcoarse-graineddiffusionregions
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{\sl Escherichia coli} ({\sl E. coli}) bacteria govern their trajectories by switching between running and tumbling modes as a function of the nutrient concentration they experienced in the past. At short time one observes a drift of the bacterial population, while at long time one observes accumulation in high-nutrient regions. Recent work has viewed chemotaxis as a compromise between drift toward favorable regions and accumulation in favorable regions. A number of earlier studies assume that a bacterium resets its memory at tumbles -- a fact not borne out by experiment -- and make use of approximate coarse-grained descriptions. Here, we revisit the problem of chemotaxis without resorting to any memory resets. We find that when bacteria respond to the environment in a non-adaptive manner, chemotaxis is generally dominated by diffusion, whereas when bacteria respond in an adaptive manner, chemotaxis is dominated by a bias in the motion. In the adaptive case, favorable drift occurs together with favorable accumulation. We derive our results from detailed simulations and a variety of analytical arguments. In particular, we introduce a new coarse-grained description of chemotaxis as biased diffusion, and we discuss the way it departs from older coarse-grained descriptions.

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