REVIEW 3 minor 137 references
Methods exist to address measurement error in both outcomes and multiple covariates in routine biomedical data analyses.
Reviewed by Pith at T0; open to challenge. T0 means a machine referee read the full paper against a public rubric. the ladder, T0–T4 →
T0 review · grok-4.3
2026-06-30 08:41 UTC pith:DDL5EVFS
load-bearing objection A clear tutorial on existing measurement error methods with supplied code and a running example, but no new techniques or results.
Methods to address measurement error in both Outcome and Covariates
The pith
A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.
Core claim
For analyses of routine data, methods that address errors in the outcome and multiple covariates are needed, and available methods can be illustrated with examples.
What carries the argument
A running example that applies and compares several correction methods for measurement error in the outcome and in multiple covariates simultaneously.
Load-bearing premise
That the reviewed correction methods remain applicable and effective when measurement error affects both the outcome and several covariates in real biomedical routine data.
What would settle it
A dataset with known true values in which none of the reviewed methods reduces bias or improves inference relative to naive analysis that ignores the errors.
If this is right
- Analyses of electronic health records and large cohort studies can reduce bias by applying methods that correct outcome and covariate errors together.
- Clinical decision-making based on routine data can avoid being misled when these correction techniques are used.
- Researchers can directly compare and select among the reviewed methods using the supplied example data and code.
- Future methodological work should focus on the gaps identified in the tutorial for this combined error setting.
Where Pith is reading between the lines
- The same correction framework could be tested on data from other fields that rely on noisy administrative records, such as education or economics.
- Extending the running example to include time-to-event outcomes would show whether the reviewed methods generalize to survival analysis.
- Simulation studies that vary the magnitude and correlation structure of the errors would quantify when each method performs best.
Editorial analysis
A structured set of objections, weighed in public.
Referee Report
Summary. The manuscript is a tutorial that reviews available methods for correcting measurement error when it affects both the outcome and multiple covariates. It motivates the need in the context of biomedical routine data (e.g., electronic health records), illustrates the methods via a running example that permits direct comparison, supplies the data and analytic code for reproducibility, and closes with a discussion of the approaches plus areas for future work.
Significance. If the illustrations accurately reflect the cited methods, the tutorial supplies a practical, accessible resource for applied statisticians working with error-prone observational data. The explicit provision of data and code is a clear strength that supports reproducibility and allows readers to verify and adapt the examples. The focus on simultaneous correction for outcome and covariate error addresses a setting that is common yet often underserved by single-error tutorials.
minor comments (3)
- [Abstract] Abstract: the statement that 'methods that address errors in the outcome and multiple covariates are needed' would be strengthened by naming the specific families of methods (e.g., regression calibration extensions, SIMEX, Bayesian approaches) that will be illustrated, so readers can immediately gauge coverage.
- Running example section: confirm that the measurement-error model assumptions (classical vs. Berkson, independence across variables) are stated explicitly for each method so that the comparison is transparent.
- Discussion: the areas of future work should be tied back to concrete limitations observed in the running example (e.g., performance with high-dimensional covariates or non-linear relationships) rather than left at a general level.
Simulated Author's Rebuttal
We thank the referee for their positive assessment of the tutorial, its focus on simultaneous correction for outcome and covariate measurement error, and the emphasis on reproducibility through provided data and code. The recommendation for minor revision is noted. No major comments were raised in the report.
Circularity Check
No significant circularity; tutorial review of existing methods
full rationale
The manuscript is a tutorial reviewing and illustrating prior methods for measurement error correction in outcomes and covariates using examples and supplied code. It advances no new derivations, predictions, theorems, or empirical claims whose validity depends on self-referential steps. All statements are descriptive of existing literature, with no load-bearing equations, fitted inputs renamed as predictions, or self-citation chains that reduce the central content to its own inputs by construction.
Axiom & Free-Parameter Ledger
read the original abstract
Biomedical research is increasingly relying on readily available routine data, such as electronic health records. Routinely collected data, as well as datasets from large cohorts, are often prone to measurement error which, if not addressed in analyses, can bias study results and ultimately mislead clinical decision-making and potentially harm patients. For this setting, methods that address errors in the outcome and multiple covariates are needed. In this tutorial, we will review available methods to address for errors in both outcomes and covariates. We will illustrate methods with use of a running example in order to compare the methods directly. Both the data and analytic code are provided for the user so that they may easily reproduce results in each example. We conclude the tutorial with a discussion of the different approaches and highlight areas of future work needed for this setting.
Reference graph
Works this paper leans on
-
[1]
International Journal of Epidemiology , volume=
Good practices for quantitative bias analysis , author=. International Journal of Epidemiology , volume=. 2014 , publisher=
work page 2014
-
[2]
International Journal of Epidemiology , volume=
A systematic review of quantitative bias analysis applied to epidemiological research , author=. International Journal of Epidemiology , volume=. 2021 , publisher=
work page 2021
-
[3]
International Journal of Epidemiology , volume=
Basic methods for sensitivity analysis of biases , author=. International Journal of Epidemiology , volume=. 1996 , publisher=
work page 1996
-
[4]
Spatial measurement error and correction by spatial
Alexeeff, Stacey E and Carroll, Raymond J and Coull, Brent , journal=. Spatial measurement error and correction by spatial. 2016 , publisher=
work page 2016
-
[5]
Journal of the Royal Statistical Society: Series A (Statistics in Society) , year=
Two-phase sampling designs for data validation in settings with covariate measurement error and continuous outcome , author=. Journal of the Royal Statistical Society: Series A (Statistics in Society) , year=
-
[6]
Statistics in Medicine , year=
Impute-then-exclude versus exclude-then-impute: Lessons when imputing a variable used both in cohort creation and as an independent variable in the analysis model , author=. Statistics in Medicine , year=
-
[7]
Journal of Statistical Theory and Practice , volume=
Bias Correction Methods for Misclassified Covariates in the Cox Model: comparison of five correction methods by simulation and data analysis , author=. Journal of Statistical Theory and Practice , volume=. 2013 , publisher=
work page 2013
-
[8]
Statistical Methods for Medical Research , volume=
Bootstrap inference for multiple imputation under uncongeniality and misspecification , author=. Statistical Methods for Medical Research , volume=
-
[9]
Low-fat dietary pattern and risk of colorectal cancer: the
Beresford, Shirley AA and Johnson, Karen C and Ritenbaugh, Cheryl and Lasser, Norman L and Snetselaar, Linda G and Black, Henry R and Anderson, Garnet L and Assaf, Annlouise R and Bassford, Tamsen and Bowen, Deborah and others , journal=. Low-fat dietary pattern and risk of colorectal cancer: the. 2006 , publisher=
work page 2006
-
[10]
International Statistical Review/Revue Internationale de Statistique , pages=
On the variances of asymptotically normal estimators from complex surveys , author=. International Statistical Review/Revue Internationale de Statistique , pages=. 1983 , publisher=
work page 1983
-
[11]
Statistics in Medicine , volume=
An approximate quasi-likelihood approach for error-prone failure time outcomes and exposures , author=. Statistics in Medicine , volume=. 2021 , publisher=
work page 2021
-
[12]
Journal of Clinical Epidemiology , volume=
Measurement error is often neglected in medical literature: a systematic review , author=. Journal of Clinical Epidemiology , volume=. 2018 , publisher=
work page 2018
-
[13]
Journal of the Royal Statistical Society: Series C (Applied Statistics) , volume=
Design and analysis of two-phase studies with binary outcome applied to Wilms tumour prognosis , author=. Journal of the Royal Statistical Society: Series C (Applied Statistics) , volume=. 1999 , publisher=
work page 1999
-
[14]
Optimum Allocation for Adaptive Multi-Wave Sampling in
Yang, JB and Shepherd, BE and Lumley, T and Shaw, PA , journal=. Optimum Allocation for Adaptive Multi-Wave Sampling in
-
[15]
MS Dissertation, University of Essex , year=
Two-phase sampling designs for multiple outcomes of interest , author=. MS Dissertation, University of Essex , year=
-
[16]
Design and analysis of two-phase studies with binary outcome applied to Wilms tumour prognosis , author=. Applied Statistics , volume=
-
[17]
Scandinavian Journal of Statistics , volume=
Weighted likelihood for semiparametric models and two-phase stratified samples, with application to Cox regression , author=. Scandinavian Journal of Statistics , volume=. 2007 , publisher=
work page 2007
- [18]
-
[19]
Measurement Error: Models, Methods, and Applications , author=. 2010 , publisher=
work page 2010
-
[20]
Measurement Error in Nonlinear Models: A Modern Perspective , author=. 2006 , publisher=
work page 2006
- [21]
-
[22]
Design aspects of calibration studies in nutrition, with analysis of missing data in linear measurement error models , author=. Biometrics , pages=. 1997 , publisher=
work page 1997
-
[23]
Journal of the American Medical Informatics Association , volume=
Automated identification of implausible values in growth data from pediatric electronic health records , author=. Journal of the American Medical Informatics Association , volume=. 2017 , publisher=
work page 2017
-
[24]
Measuring the quality of observational study data in an international HIV research network , author=. PLOS ONE , volume=
-
[25]
Journal of Clinical and Translational Science , volume=
Lessons learned from over a decade of data audits in international observational HIV cohorts in Latin America and East Africa , author=. Journal of Clinical and Translational Science , volume=
-
[26]
Journal of the American Statistical Association , volume=
Simulation-extrapolation estimation in parametric measurement error models , author=. Journal of the American Statistical Association , volume=. 1994 , publisher=
work page 1994
-
[27]
Statistics in Medicine , volume=
Optimal multiwave sampling for regression modeling in two-phase designs , author=. Statistics in Medicine , volume=. 2020 , publisher=
work page 2020
-
[28]
Statistics in Medicine , volume=
Optimal sampling for design-based estimators of regression models , author=. Statistics in Medicine , volume=. 2022 , publisher=
work page 2022
-
[29]
International Journal of Epidemiology , volume =
Cole, Stephen R and Chu, Haitao and Greenland, Sander , title =. International Journal of Epidemiology , volume =
-
[30]
Journal of the American Statistical Association , volume=
Calibration estimators in survey sampling , author=. Journal of the American Statistical Association , volume=. 1992 , publisher=
work page 1992
-
[31]
Journal of the American Statistical Association , volume=
Generalized raking procedures in survey sampling , author=. Journal of the American Statistical Association , volume=. 1993 , publisher=
work page 1993
-
[32]
An audit strategy for progression-free survival , author=. Biometrics , volume=
-
[33]
American Journal of Epidemiology , volume=
Does nondifferential misclassification of exposure always bias a true effect toward the null value? , author=. American Journal of Epidemiology , volume=. 1990 , publisher=
work page 1990
-
[34]
Controlled Clinical Trials , volume=
Power and sample size calculations for studies involving linear regression , author=. Controlled Clinical Trials , volume=. 1998 , publisher=
work page 1998
-
[35]
American Journal of Epidemiology , volume=
Accounting for misclassified outcomes in binary regression models using multiple imputation with internal validation data , author=. American Journal of Epidemiology , volume=. 2013 , publisher=
work page 2013
- [36]
-
[37]
American Journal of Epidemiology , volume=
Regression calibration in studies with correlated variables measured with error , author=. American Journal of Epidemiology , volume=. 2001 , publisher=
work page 2001
-
[38]
Annals of Applied Statistics , volume=
Accounting for dependent errors in predictors and time-to-event outcomes using electronic health records, validation samples and multiple imputation , author=. Annals of Applied Statistics , volume=. 2020 , publisher=
work page 2020
-
[39]
American Journal of Epidemiology , volume=
Multiple imputation variance estimation in studies with missing or misclassified inclusion criteria , author=. American Journal of Epidemiology , volume=
-
[40]
Statistics in Medicine , volume=
A validation sampling approach for consistent estimation of adverse drug reaction risk with misclassified right-censored survival data , author=. Statistics in Medicine , volume=. 2018 , publisher=
work page 2018
-
[41]
Measurement error in covariates in the marginal hazards model for multivariate failure time data , author=. Biometrics , volume=. 2004 , publisher=
work page 2004
-
[42]
BMC Medical Research Methodology , volume=
A double SIMEX approach for bivariate random-effects meta-analysis of diagnostic accuracy studies , author=. BMC Medical Research Methodology , volume=. 2017 , publisher=
work page 2017
-
[43]
Measurement Error and Misclassification in Statistics and Epidemiology: Impacts and Bayesian Adjustments , author=. 2003 , publisher=
work page 2003
-
[44]
Gu, Xiangdong and Ma, Yunsheng and Balasubramanian, Raji , journal=. Semiparametric time to event models in the presence of error-prone, self-reported outcomes: With application to the. 2015 , publisher=
work page 2015
-
[45]
Scandinavian Journal of Statistics , volume=
Combining inverse probability weighting and multiple imputation to improve robustness of estimation , author=. Scandinavian Journal of Statistics , volume=. 2016 , publisher=
work page 2016
-
[46]
Statistical Methods in Medical Research , volume=
Two-phase analysis and study design for survival models with error-prone exposures , author=. Statistical Methods in Medical Research , volume=. 2021 , publisher=
work page 2021
-
[47]
Statistics in Medicine , volume=
Combining multiple imputation with raking of weights: An efficient and robust approach in the setting of nearly true models , author=. Statistics in Medicine , volume=. 2021 , publisher=
work page 2021
-
[48]
Functional data analysis for sparse longitudinal data , author=. JASA , year=
- [49]
-
[50]
Statistics in Medicine , volume=
Accelerated failure time models with covariates subject to measurement error , author=. Statistics in Medicine , volume=. 2007 , publisher=
work page 2007
-
[51]
Pharmaceutical Statistics , volume=
Attenuation of treatment effect due to measurement variability in assessment of progression-free survival , author=. Pharmaceutical Statistics , volume=. 2012 , publisher=
work page 2012
-
[52]
Journal of the American Statistical Association , volume=
A generalization of sampling without replacement from a finite universe , author=. Journal of the American Statistical Association , volume=. 1952 , publisher=
work page 1952
-
[53]
Estimating the parameters in the Cox model when covariate variables are measured with error , author=. Biometrics , pages=. 1998 , publisher=
work page 1998
-
[54]
Journal of the American Statistical Association , volume=
Cox regression with accurate covariates unascertainable: A nonparametric-correction approach , author=. Journal of the American Statistical Association , volume=. 2000 , publisher=
work page 2000
-
[55]
Errors-in-covariates effect on estimating functions: Additivity in limit and nonparametric correction , author=. Statistica Sinica , pages=. 2006 , publisher=
work page 2006
-
[56]
Analysis of progression-free survival data using a discrete time survival model that incorporates measurements with and without diagnostic error , author=. Clinical Trials , pages=. 2010 , publisher=
work page 2010
-
[57]
Journal of Exposure Sciences and Environmental Epidemiology , volume=
Reproducibility of urinary bisphenol A concentrations measured during pregnancy in the Generation R Study , author=. Journal of Exposure Sciences and Environmental Epidemiology , volume=
-
[58]
American Journal of Epidemiology , volume=
Sample size requirements for calibration studies of dietary intake measurements in prospective cohort investigations , author=. American Journal of Epidemiology , volume=. 1995 , publisher=
work page 1995
-
[59]
Statistics in Medicine , volume=
The role of frailty models and accelerated failure time models in describing heterogeneity due to omitted covariates , author=. Statistics in Medicine , volume=
-
[60]
Statistics in Medicine , volume=
Keogh, Ruth H and Shaw, Pamela A and Gustafson, Paul and Carroll, Raymond J and Deffner, Veronika and Dodd, Kevin W and K. Statistics in Medicine , volume=. 2020 , publisher=
work page 2020
-
[61]
Measurement error in the timing of events: effect on survival analyses in randomized clinical trials , author=. Clinical Trials , year=
-
[62]
A general method for dealing with misclassification in regression: the misclassification
K. A general method for dealing with misclassification in regression: the misclassification. Biometrics , volume=. 2006 , publisher=
work page 2006
-
[63]
Journal of the American Statistical Association , volume=
Improving the efficiency of relative-risk estimation in case-cohort studies , author=. Journal of the American Statistical Association , volume=. 2004 , publisher=
work page 2004
-
[64]
Statistics in Medicine , volume=
Effects of mismodelling and mismeasuring explanatory variables on tests of their association with a response variable , author=. Statistics in Medicine , volume=. 1988 , publisher=
work page 1988
-
[65]
The Newsletter of the R Project Volume 6/4, October 2006 , pages=
A short Introduction to the SIMEX and MCSIMEX , author=. The Newsletter of the R Project Volume 6/4, October 2006 , pages=
work page 2006
-
[66]
Journal of Infectious Diseases , volume=
Race and sex differences in antiretroviral therapy use and mortality among HIV-infected persons in care , author=. Journal of Infectious Diseases , volume=. 2009 , publisher=
work page 2009
-
[67]
Sociological Methods & Research , volume=
A comparison of three popular methods for handling missing data: complete-case analysis, inverse probability weighting, and multiple imputation , author=. Sociological Methods & Research , volume=. 2024 , publisher=
work page 2024
-
[68]
Covariate measurement errors in frailty models for clustered survival data , author=. Biometrika , volume=. 2000 , publisher=
work page 2000
-
[69]
Efficient odds ratio estimation under two-phase sampling using error-prone data from a multi-national HIV research cohort , author=. Biometrics , volume=
-
[70]
Robustness of semiparametric efficiency in nearly-true models for two-phase samples
Robustness of semiparametric efficiency in nearly-true models for two-phase samples , author=. arXiv Preprint arXiv:1707.05924 , year=
work page internal anchor Pith review Pith/arXiv arXiv
-
[71]
International Statistical Review , volume=
Connections between survey calibration estimators and semiparametric models for incomplete data , author=. International Statistical Review , volume=. 2011 , publisher=
work page 2011
-
[72]
Complex surveys: a guide to analysis using R , author=. 2011 , publisher=
work page 2011
-
[73]
Validation data-based adjustments for outcome misclassification in logistic regression: an illustration , author=. Epidemiology , year=
-
[74]
American Journal of Epidemiology , volume=
Logistic regression when the outcome is measured with uncertainty , author=. American Journal of Epidemiology , volume=. 1997 , publisher=
work page 1997
-
[75]
Statistics in Medicine , volume=
Incorporating validation subsets into discrete proportional hazards models for mismeasured outcomes , author=. Statistics in Medicine , volume=
- [76]
-
[77]
Statistics in Medicine , volume=
Adaptive sampling in two-phase designs: a biomarker study for progression in arthritis , author=. Statistics in Medicine , volume=. 2015 , publisher=
work page 2015
-
[78]
Discrete proportional hazards models for mismeasured outcomes , author=. Biometrics , volume=. 2003 , publisher=
work page 2003
-
[79]
Multiple imputation inferences with uncongenial sources of input , author=. Statistical Science , volume=
-
[80]
Statistics in Medicine , volume=
Using multiple frames in health surveys , author=. Statistics in Medicine , volume=. 2009 , publisher=
work page 2009
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