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Slice Sampling

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arxiv physics/0009028 v1 pith:IC44EGGB submitted 2000-09-07 physics.data-an physics.comp-ph

classification physics.data-anphysics.comp-ph
keywords samplingslicemethodsdistributionuniformadaptadaptivelyapproach
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Markov chain sampling methods that automatically adapt to characteristics of the distribution being sampled can be constructed by exploiting the principle that one can sample from a distribution by sampling uniformly from the region under the plot of its density function. A Markov chain that converges to this uniform distribution can be constructed by alternating uniform sampling in the vertical direction with uniform sampling from the horizontal `slice' defined by the current vertical position, or more generally, with some update that leaves the uniform distribution over this slice invariant. Variations on such `slice sampling' methods are easily implemented for univariate distributions, and can be used to sample from a multivariate distribution by updating each variable in turn. This approach is often easier to implement than Gibbs sampling, and more efficient than simple Metropolis updates, due to the ability of slice sampling to adaptively choose the magnitude of changes made. It is therefore attractive for routine and automated use. Slice sampling methods that update all variables simultaneously are also possible. These methods can adaptively choose the magnitudes of changes made to each variable, based on the local properties of the density function. More ambitiously, such methods could potentially allow the sampling to adapt to dependencies between variables by constructing local quadratic approximations. Another approach is to improve sampling efficiency by suppressing random walks. This can be done using `overrelaxed' versions of univariate slice sampling procedures, or by using `reflective' multivariate slice sampling methods, which bounce off the edges of the slice.

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Forward citations

Cited by 5 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Gaussian processes on ray-guided transformed uniform grids for fast, flexible, and auto-differentiable adaptive source reconstruction in lens modelling

    astro-ph.IM 2026-06 unverdicted novelty 7.0 of 10

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  2. The overconcentrated dark halo in the strong lens SDSS J0946+1006 is a subhalo: evidence for self interacting dark matter?

    astro-ph.CO 2024-11 conditional novelty 7.0 of 10

    The dark matter clump in lens J0946+1006 is a subhalo at z=0.207 with a steep density profile, a >5 sigma outlier from LCDM expectations, possibly pointing to self-interacting dark matter.

  3. Cobaya: Code for Bayesian Analysis of hierarchical physical models

    astro-ph.IM 2020-05 accept novelty 7.0 of 10

    Cobaya is a modular Bayesian analysis code that exploits model interdependencies via automatic caching and a novel parameter-blocking algorithm to minimize sampling cost.

  4. Timing Gamma-ray Pulsars using Gibbs Sampling

    astro-ph.HE 2026-01 unverdicted novelty 6.0 of 10

    A Gibbs sampling technique marginalizes over photon-to-Gaussian assignments to fit timing and noise models to discrete gamma-ray arrival times while accounting for pulse-profile uncertainty.

  5. The Manticore Project I: a digital twin of our cosmic neighbourhood from Bayesian field-level analysis

    astro-ph.CO 2025-05 conditional novelty 6.0 of 10

    Manticore-Local delivers Bayesian constrained simulations that reproduce major clusters and beat prior velocity-field reconstructions, but its LCDM-consistency and no-underdensity findings are partly enforced by priors.

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