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arxiv: 1108.4553 · v2 · pith:LSV7AFVVnew · submitted 2011-08-23 · ❄️ cond-mat.soft · cond-mat.stat-mech

Monomer dynamics of a wormlike chain

classification ❄️ cond-mat.soft cond-mat.stat-mech
keywords chaindynamicsequationsmotiontracerwormlikeaccurateagitated
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We derive the stochastic equations of motion for a tracer that is tightly attached to a semiflexible polymer and confined or agitated by an externally controlled potential. The generalised Langevin equation, the power spectrum, and the mean-square displacement for the tracer dynamics are explicitly constructed from the microscopic equations of motion for a weakly bending wormlike chain by a systematic coarse-graining procedure. Our accurate analytical expressions should provide a convenient starting point for further theoretical developments and for the analysis of various single-molecule experiments and of protein shape fluctuations.

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