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Sparse identification of nonlinear dynamics and Koopman operators with Shallow Recurrent Decoder Networks

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arxiv 2501.13329 v2 pith:O34EFEUE submitted 2025-01-23 cs.LG cs.AImath.DS

classification cs.LGcs.AImath.DS
keywords datamodeldynamicslatentdecoderidentificationmodelsrecurrent
verification ladder T0 review T1 audit T2 compute T3 formal
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Modeling real-world spatio-temporal data is exceptionally difficult due to inherent high dimensionality, measurement noise, partial observations, and often expensive data collection procedures. In this paper, we present Sparse Identification of Nonlinear Dynamics with SHallow REcurrent Decoder networks (SINDy-SHRED), a method to jointly solve the sensing and model identification problems with simple implementation, efficient computation, and robust performance. SINDy-SHRED uses Gated Recurrent Units to model the temporal sequence of sparse sensor measurements along with a shallow decoder network to reconstruct the full spatio-temporal field from the latent state space. Our algorithm introduces a SINDy-based regularization for which the latent space progressively converges to a SINDy-class functional, provided the projection remains within the set. In restricting SINDy to a linear model, a Koopman-SHRED model is generated. SINDy-SHRED (i) learns a symbolic and interpretable generative model of a parsimonious and low-dimensional latent space for the complex spatio-temporal dynamics, (ii) discovers new physics models even for well-known physical systems, (iii) achieves provably robust convergence with an observed globally convex loss landscape, and (iv) achieves superior accuracy, data efficiency, and training time, all with fewer model parameters. We conduct systematic experimental studies on PDE data such as turbulent flows, real-world sensor measurements for sea surface temperature, and direct video data. The interpretable SINDy and Koopman models of latent state dynamics enable stable and accurate long-term video predictions, outperforming all current baseline deep learning models in accuracy, training time, and data requirements, including Convolutional LSTM, PredRNN, ResNet, and SimVP.

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Cited by 4 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Latent Dynamics Graph Convolutional Networks for model order reduction of parameterized time-dependent PDEs

    cs.LG 2026-01 conditional novelty 5.0 of 10

    LD-GCN couples an encoder-free latent-space neural ODE with a graph convolutional decoder, achieving accurate reduced-order modeling of time-dependent parameterized PDEs and detecting bifurcations from the latent traj...

  2. CS-SHRED: Enhancing SHRED for Robust Recovery of Spatiotemporal Dynamics

    cs.LG 2025-07 conditional novelty 4.0 of 10

    Adding a Fourier compressed-sensing denoising step and an SNR-weighted loss to SHRED improves reconstruction of spatiotemporal fields from subsampled sensor data in the paper's four test cases.

  3. PySHRED: A Python package for SHallow REcurrent Decoding for sparse sensing, model reduction and scientific discovery

    cs.LG 2025-07 conditional novelty 4.0 of 10

    PySHRED is an open-source Python package that implements shallow recurrent decoder networks for sparse sensing, reduced-order modeling, and latent-dynamics discovery.

  4. Stochastic and Non-local Closure Modeling for Nonlinear Dynamical Systems via Latent Score-based Generative Models

    cs.LG 2025-06 conditional novelty 4.0 of 10

    Joint training of autoencoders with diffusion models in latent space gives stochastic turbulence closure accuracy close to physical-space diffusion models at roughly 5-7x lower cost.

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