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arxiv: 2301.12586 · v2 · pith:P2RYHNQ4 · submitted 2023-01-29 · cs.LG · cs.CL

Unifying Molecular and Textual Representations via Multi-task Language Modelling

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classification cs.LG cs.CL
keywords languagedomainsmodelstaskschemicalmodelnaturalacross
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The recent advances in neural language models have also been successfully applied to the field of chemistry, offering generative solutions for classical problems in molecular design and synthesis planning. These new methods have the potential to fuel a new era of data-driven automation in scientific discovery. However, specialized models are still typically required for each task, leading to the need for problem-specific fine-tuning and neglecting task interrelations. The main obstacle in this field is the lack of a unified representation between natural language and chemical representations, complicating and limiting human-machine interaction. Here, we propose the first multi-domain, multi-task language model that can solve a wide range of tasks in both the chemical and natural language domains. Our model can handle chemical and natural language concurrently, without requiring expensive pre-training on single domains or task-specific models. Interestingly, sharing weights across domains remarkably improves our model when benchmarked against state-of-the-art baselines on single-domain and cross-domain tasks. In particular, sharing information across domains and tasks gives rise to large improvements in cross-domain tasks, the magnitude of which increase with scale, as measured by more than a dozen of relevant metrics. Our work suggests that such models can robustly and efficiently accelerate discovery in physical sciences by superseding problem-specific fine-tuning and enhancing human-model interactions.

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Cited by 3 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score.

  1. Target-Aware Bandit Allocation for Scalable Surrogate Optimization in Chemical Space

    cs.LG 2026-06 unverdicted novelty 6.0

    Introduces BOBa, a multi-armed bandit method for scalable surrogate optimization that adaptively allocates inference and evaluations to promising partitions of ultra-large chemical libraries.

  2. MolReFlect: Towards In-Context Fine-grained Alignments between Molecules and Texts

    cs.CL 2024-11 unverdicted novelty 6.0

    MolReFlect introduces a teacher-student framework that automatically creates fine-grained molecule-text alignments to achieve SOTA results on molecule-caption translation.

  3. ChemCrow: Augmenting large-language models with chemistry tools

    physics.chem-ph 2023-04 conditional novelty 6.0

    ChemCrow augments LLMs with 18 expert chemistry tools to autonomously plan and execute syntheses and guide molecular discoveries in organic synthesis, drug discovery, and materials design.