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MolVision: Molecular Property Prediction with Vision Language Models

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arxiv 2507.03283 v1 pith:W2NXM5JI submitted 2025-07-04 cs.CV

MolVision: Molecular Property Prediction with Vision Language Models

classification cs.CV
keywords molecularmolvisionpredictionmodelspropertygithubhttpsimages
verification ladder T0 review T1 audit T2 compute T3 formal T4 reserved
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Molecular property prediction is a fundamental task in computational chemistry with critical applications in drug discovery and materials science. While recent works have explored Large Language Models (LLMs) for this task, they primarily rely on textual molecular representations such as SMILES/SELFIES, which can be ambiguous and structurally less informative. In this work, we introduce MolVision, a novel approach that leverages Vision-Language Models (VLMs) by integrating both molecular structure as images and textual descriptions to enhance property prediction. We construct a benchmark spanning ten diverse datasets, covering classification, regression and description tasks. Evaluating nine different VLMs in zero-shot, few-shot, and fine-tuned settings, we find that visual information improves prediction performance, particularly when combined with efficient fine-tuning strategies such as LoRA. Our results reveal that while visual information alone is insufficient, multimodal fusion significantly enhances generalization across molecular properties. Adaptation of vision encoder for molecular images in conjunction with LoRA further improves the performance. The code and data is available at : $\href{https://molvision.github.io/MolVision/}{https://molvision.github.io/MolVision/}$.

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Forward citations

Cited by 2 Pith papers

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  1. MolDeTox: Evaluating Language Model's Stepwise Fragment Editing for Molecular Detoxification

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    MolDeTox is a new benchmark that shows fragment-level stepwise editing by LLMs and VLMs improves structural validity and detoxification quality over prior toxicity-focused evaluations.

  2. Toward Better Geometric Representations for Molecule Generative Models

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    LENSEs improves representation-conditioned molecule generation by jointly training a multi-level representation head, perceptual loss, and REPA alignment on pretrained encoders, yielding 97.28% validity and 98.51% sta...