REVIEW 4 major objections 6 minor 69 references
Quantifying reticulocyte biomechanics in health and disease
T0 review · 4 major / 6 minor · reviewed 2026-08-01 · deepseek-v4-flash
Pith's one-line read A single critical pressure gradient for slit passage orders reticulocyte subtypes and places altitude blood syndromes on one mechanical axis.
desk verdict Solid pairwise simulation and a useful geometry contrast, but the paper's load-bearing ΔPc axis is undercut by calibration circularity and by comparing microchannel thresholds to splenic pressures. read the letter →
The pith
A machine-rendered reading of the paper's core claim, the machinery that carries it, and where it could break.
The reading
What carries the argument
The central object is the single-cell critical pressure gradient ΔP_c: the minimum pressure drop per unit length required for a cell to pass through a given constriction. It is set jointly by membrane shear modulus, surface-to-volume ratio, and bending modulus, and it acts as the one number that orders all cell types and predicts splenic retention.
What would settle it
Measure single-cell transit of individually classified reticulocyte subtypes and sickle-trait cells through ~1.2-µm slits at controlled pressure gradients and compare the resulting ΔP_c ordering with the predicted CTR < R3 < R2 < R1 < SCT sequence; a reversal or a leader-induced reduction below a follower's isolated threshold would refute the central claims.
Extended reading notes
Core claim
Using microchannel experiments and particle-based simulations, the authors calibrate three reticulocyte models and show that a single-cell critical pressure gradient, ΔP_c, controls splenic-slit passage. ΔP_c rises monotonically from control discocytes through R3, R2, R1 reticulocytes to sickle-cell-trait cells. Microchannels amplify shear-modulus differences, while splenic slits are governed by surface-to-volume ratio, so slit passage varies only 10–20% across subtypes. Pairwise simulations find no wake-unjamming: a leader never lowers a follower below its isolated threshold, but a compliant leader reduces a stiff follower's critical pressure by ~12% and transit time by ~10%. The authors pl
Load-bearing premise
The three reticulocyte models are assumed to represent real cells, but their parameters were chosen from published ranges and adjusted until simulated transit matched observations, without donor-matched independent validation for each subtype.
Editorial extensions
If this is right
- Splenic filtration risk for any red-cell disorder can be summarized by a single per-cell pressure threshold, so future diagnostics might map patient cell populations onto the ΔP_c axis.
- Microchannel and splenic-slit assays probe different mechanical properties, so combining them can identify whether a defect stems from shear stiffness or loss of surface-area reserve.
- Reticulocyte benefit in crowded flow is a leader-compliance effect on trailing cells, not a wake-mediated rescue, suggesting interventions focus on reducing leader lodging rather than expecting soft cells to pull stiff ones through.
- If chronic-mountain-sickness hyperviscosity is mostly hematocrit-driven, then lowering hematocrit should substantially reduce low-shear viscosity without needing to alter single-cell deformability.
- The sickle-cell-trait splenic syndrome occurs when deoxygenated cells' ΔP_c meets or exceeds the splenic pressure; rapid ascent raises both challenge rate and local crowding, explaining its acute onset.
Reading between the lines
- The ΔP_c axis may extend to other heterogeneous red-cell populations, such as diabetic or Gaucher-disease cells, by measuring their single-cell thresholds on the same slit geometry.
- A direct experimental test is to measure single-cell ΔP_c for classified reticulocyte subtypes through ~1.2-µm slits; if the monotonic ordering or the 12%/10% leader effects do not reproduce, the quantitative claims would need revision.
- The paper's constant-pressure pairwise simulations may miss stick-slip avalanche release seen in vivo; adding pulsatile pressure and longer queues could reveal collective dynamics that the current claims do not cover.
Editorial analysis
A structured set of objections, weighed in public.
Referee Report
Summary. This paper combines a microfluidic assay of reticulocyte-rich blood with dissipative particle dynamics (DPD) simulations to parameterize three reticulocyte subtypes (R1–R3) by shear modulus, surface-to-volume ratio, and bending modulus. It then simulates single-cell transit through 5-µm microchannels and 1.2-µm splenic slits, pairwise leader–follower passage, collective clogging, and suspension rheology. The central claims are (i) microchannels amplify mechanical heterogeneity (R1 transits 30–50% more slowly than R3/CTR) while splenic slits discriminate subtypes by only 10–20%; (ii) a leading cell never lets a follower pass below its own single-cell critical pressure gradient ΔP_c, although a compliant leader lowers a stiff follower's threshold by ~12% and speeds its transit by ~10%; and (iii) ΔP_c rises monotonically from CTR through R1–R3 to SCT, placing SCT cells within the splenic operating pressure range, while CMS hyperviscosity is attributed mainly to hematocrit-driven crowding. The paper organizes AMS, CMS, and SCT splenic syndrome on a single mechanical axis defined by ΔP_c relative to the splenic operating pressure.
Significance. If the ΔP_c axis were established, the paper would provide a valuable unifying framework connecting single-cell deformability to altitude-related clinical phenotypes, with potentially broad relevance to splenic filtration and blood rheology. The study has clear strengths: it reproduces the shear-thinning viscosity of control blood, compares slit-passage kinetics to published in vivo rat-spleen data, and honestly discusses several limitations. The pairwise negative result against a wake-unjamming picture is a clean simulation output, and the geometry contrast between microchannel and slit responses is informative. However, the central ΔP_c ordering is not yet independently established: the R1–R3 parameters are calibrated on the same microchannel and flow-shape data later presented as evidence, the SCT/splenic claim compares microchannel thresholds to slit operating pressures, and the universal 'never' conclusion rests on n=3 simulations. These issues are load-bearing but addressable with additional simulations and reframing.
major comments (4)
- [Parameter setup for reticulocyte models; Results: Flow-induced shape response] The Methods state that 'the model parameters were adjusted until the simulated cell matched the observed transit' and that the same data are used for cross-validation, while the abstract claims the parameters were fixed 'without free adjustment.' The flow-shape section then concedes that donor-matched experimental shape-transition data are unavailable, so the comparison establishes internal consistency rather than independent validation. Consequently, the later claim that R1 transits 30–50% more slowly in microchannels is partly a restatement of the calibration target, not an independent prediction. Please provide withheld-data validation (e.g., transit distributions, a second constriction geometry, or direct donor-matched shape data) or explicitly relabel these results as consistency checks.
- [Fig. 7B; Methods: Splenic slit traversal; Results: geometry orthogonality] The load-bearing ΔP_c axis is built from thresholds measured in the 5 µm × 2.7 µm microchannel (CTR ≈ 0.65, R3 ≈ 0.77, R2 ≈ 0.84, R1 ≈ 0.93, SCT ≈ 1.5 Pa/µm), which are then compared directly to the in vivo splenic slit operating pressure (1–3 Pa/µm) to argue that SCT cells are trapped. The paper itself demonstrates that the two geometries have different governing descriptors (shear-modulus-dominated vs. surface-to-volume-dominated), so a microchannel critical pressure is not automatically the slit critical pressure. No single-cell slit-geometry ΔP_c is reported for CTR/R1–R3/SCT; the pairwise slit simulations give follower thresholds 1.00–1.12 Pa/µm. Without slit-geometry single-cell thresholds, the monotonic ΔP_c ordering relative to the splenic operating pressure is not established.
- [Fig. 5B,C; Simulations of cell-cell interaction] The universal negative claim—'a leading cell never lets a follower pass below its own single-cell threshold'—is supported only by means over n=3 simulations at a small number of conditions. No confidence intervals are reported for the threshold values, and the text's assertion that the result holds 'across driving forces, thermal realizations, and pore widths' is not backed by a quantitative statement of how many configurations and random seeds were tested. Since the paper presents this as a load-bearing negative result, please provide the search space and uncertainty quantification, or soften the claim to 'not observed in the sampled parameter range.'
- [Table 1; Fig. 7B; Discussion] The SCT cell is central to the clinical conclusion, but its model parameters are never specified in a table: the reader is told only that μ = 8.0 µN/m and that the cell has a low S/V in the pairwise section, and the collective clogging simulations use 'CTR + SCT' without a parameter table or source for the SCT geometry. Also, because R1–R3 vary μ, S/V, and k_c simultaneously, the statement that ΔP_c is 'set jointly by shear modulus and surface-to-volume ratio' is not isolable; bending modulus changes from 4.8 to 7.2 × 10^-19 J across the same models. A sensitivity analysis varying one descriptor at a time is needed to support the mechanistic attribution.
minor comments (6)
- [Abstract and Methods] The abstract says the parameters are fixed 'without free adjustment,' while the Methods say 'the model parameters were adjusted until the simulated cell matched the observed transit.' Please align the wording.
- [Fig. 7B] The critical pressure thresholds are reported as point values with no error bars or confidence intervals. Add SEM/CI or state the number of independent simulations for each threshold.
- [Pairwise interaction section] The 'wake-unjamming' picture is invoked without a citation or a quantitative definition. Please cite the relevant prior work or explain the mechanism being ruled out.
- [Viscosity analysis] The Krieger–Dougherty estimate that a ~11-point hematocrit increase produces a 3–6× low-shear viscosity rise is stated without showing the values of [η] and φ_m used. Include the calculation in the SI.
- [Fig. 4D] The claim that simulation traversal curves lie 'within the envelope' of the MacDonald et al. in vivo data is qualitative. Please add a quantitative comparison metric (e.g., RMS deviation or overlap measure).
- [Data availability] The data-availability statement says all data are in the paper and SI, but no repository is provided. Consider depositing simulation input scripts and parameter files.
Circularity Check
Reticulocyte transit 'prediction' is a refit of the calibration target, and the microchannel ΔPc is relabeled as the splenic threshold.
-
fitted input called prediction
[Results: 'The experimental anchor for this calibration...'; Results: 'Simulations of single-cell transit dynamics through confined geometries' (Fig. 4B)]
"It is this experimental transit behavior, together with the flow-induced shape change quantified in the next section (Fig. 3), that constrains the reticulocyte shear modulus μ and surface-to-volume ratio S/V: the model parameters were adjusted until the simulated cell matched the observed transit, and were then held fixed for every subsequent analysis. ... Microchannel simulations (Fig. 4B) showed ... R1 advanced 30–50% more slowly than R3 or the CTR control over the measured ΔP/L range."
R1-R3 were calibrated by adjusting μ and S/V until simulated microchannel transit matched the experiments in the same 5-μm channel geometry. The later 'single-cell simulation' result that R1 transits 30–50% more slowly is therefore the calibration target restated as a model output: the ordering R1<R2<R3 follows from the input shear-modulus ranking (8.28 > 7.00 > 6.29 μN/m), and the magnitude is a refit, not an independent prediction. The flow-shape 'consistency check' is explicitly not independent validation, as the paper concedes that donor-matched shape-transition data for individual subtypes are not available.
-
other
[Results: 'Simulations of transition dynamics of RBC suspensions through an array of narrow slits' (Fig. 7B); Results opening: 'central innovation ... required for IES passage']
"the critical pressure gradient ΔPc required for IES passage, read relative to the estimated in vivo splenic operating pressure of 1–3 Pa/μm ... By monitoring flow initiation as a function of applied ΔP/L, we identified distinct critical pressure gradients ΔPc for each cell type (Fig. 7B) ... sickle-cell-trait (SCT) RBCs at the highest end (≈1.5 Pa/μm) ... the elevated SCT threshold overlaps with the estimated in vivo splenic trans-slit pressure range and provides a mechanical rationale for splenic syndrome."
Fig. 7B's ΔPc values are obtained in the 5-μm microchannel—the same geometry used to calibrate R1-R3—yet the results section labels ΔPc as 'required for IES passage' and compares it directly with the splenic trans-slit pressure. The paper itself establishes that microchannel passage is shear-modulus-dominated while slit passage is surface-to-volume-dominated, so the microchannel threshold is not demonstrated to equal the slit threshold; no single-cell slit ΔPc is reported for CTR/R1-R3/SCT. The splenic-trapping conclusion is thus the fitted microchannel threshold renamed as the splenic threshold rather than an independent slit-geometry prediction.
full rationale
The reticulocyte-specific predictions are partially circular: the R1-R3 constitutive parameters are explicitly adjusted to reproduce the microchannel transit that is later reported as the 30–50% microchannel speed penalty, and the Fig. 7B ΔPc values come from that same 5-μm channel before being relabeled as 'required for IES passage' for the splenic comparison. The paper itself states that donor-matched shape-transition data for individual subtypes are not available, so the R1-R3 ordering is not independently validated. At the same time, the study is not wholly circular: the CTR-RBC microchannel comparison against Quinn et al., the control-blood and Gaucher rheology benchmarks, and the pairwise leader-follower simulations are external or new outputs, and the CMS hyperviscosity estimate is an analytical hematocrit scaling. Several self-citations (e.g., [34], [56]) supply model parameters, but these are published, externally reviewed results and are not the main source of circularity. Because the central subtype-transit 'prediction' and the splenic placement of SCT reduce partly to the calibration input, while meaningful independent content remains, the score is 6 rather than 8-10.
Assumptions & free parameters
free parameters (10)
- R1 reticulocyte shear modulus μ =
8.28 µN/m
- R1 surface-to-volume ratio S/V =
1.56 µm^-1 (160.0 µm^2 / 102.6 fL)
- R1 bending modulus kc =
4.8e-19 J
- R2 shear modulus μ =
7.00 µN/m
- R2 S/V =
1.52 µm^-1 (150.0 / 98.7)
- R2 bending modulus kc =
4.8e-19 J
- R3 shear modulus μ =
6.29 µN/m
- R3 S/V =
1.48 µm^-1 (142.0 / 95.9)
- R3 bending modulus kc =
7.2e-19 J
- Morse aggregation parameters De, β, r0 =
De=0.3 kBT, β=1.5/r_c, r0=0.3 r_c
assumptions (6)
- domain assumption The DPD RBC model of Fedosov et al. accurately reproduces RBC mechanics and suspension rheology.
- domain assumption Microchannel transit is governed mainly by shear modulus; splenic slit passage mainly by surface-to-volume ratio.
- domain assumption In vivo splenic trans-slit pressure gradient is 1–3 Pa/µm.
- ad hoc to paper R1-R3 mechanical states map onto multilobular, cup-shaped, and near-discocytic reticulocyte classes.
- standard math Krieger–Dougherty-type scaling captures the hematocrit contribution to CMS hyperviscosity.
- domain assumption The extended LAMMPS DPD implementation faithfully represents the model equations.
invented entities (1)
-
R1-R3 computational reticulocyte models
Cite this review
Pith. "Pith review of Quantifying reticulocyte biomechanics in health and disease." pith.science (2026). https://pith.science/paper/XDHO6AYO
@misc{pith2026260721810,
author = {Pith},
title = {Pith review of: Quantifying reticulocyte biomechanics in health and disease},
year = {2026},
howpublished = {\url{https://pith.science/paper/XDHO6AYO}},
note = {Machine review of arXiv:2607.21810}
}
read the original abstract
Red blood cell (RBC) populations are mechanically heterogeneous, yet how this shapes transport, clogging, and rheology in confined environments remains unclear. We combine microfluidic microchannel experiments with dissipative particle dynamics (DPD) simulations to study how reticulocyte morphology, deformability, and cell-cell hydrodynamic coupling govern microconfined blood flow, and link these to acute and chronic mountain sickness. Reticulocyte-rich samples show three subtypes (multilobular, cup-shaped, near-discocytic), parameterized (R1-R3) by fitting microchannel transit and shape-under-flow data. Single-cell simulations show that 5-micron microchannels amplify mechanical heterogeneity (R1 transits 30-50% more slowly than softer cells), whereas bending-dominated splenic slits discriminate subtypes by only 10-20%. Pairwise simulations show that a leading cell never lets a follower pass below its own single-cell threshold - so the order-of-magnitude, wake-"unjamming" reduction is absent - but the leader's compliance shapes crowded single-file passage: a soft reticulocyte leader lowers a trailing stiff cell's critical passage pressure by ~12% relative to a stiff (sickle-trait) leader and speeds its transit by ~10%. The controlling variable is the single-cell critical pressure gradient Delta_P_c, which rises monotonically with membrane stiffness from control discocytes through reticulocytes to sickle-cell-trait cells. Our simulations reproduce the shear-thinning viscosity of control blood, against which the reported chronic-mountain-sickness hyperviscosity reflects predominantly hematocrit-driven crowding rather than a change in single-cell rheology. These results place benign acclimatization, chronic-mountain-sickness hyperviscosity, and sickle-cell-trait splenic syndrome on a single mechanical axis defined by Delta_P_c relative to the splenic operating pressure.
Figures
Figures from the paper (7 more)
Reference graph
Works this paper leans on
-
[1]
Structure and function of the spleen
Mebius RE, Kraal G. Structure and function of the spleen. Nature Reviews Immunology. 2005;5(8):606–616
2005
-
[2]
Normal structure, function, and histology of the spleen
Cesta MF. Normal structure, function, and histology of the spleen. Toxicologic Pathology. 2006;34(5):455–465
2006
-
[3]
Mechanics of diseased red blood cells in human spleen and consequences for hereditary blood disorders
Li H, Lu L, Li X, Buffet PA, Dao M, Karniadakis GE, et al. Mechanics of diseased red blood cells in human spleen and consequences for hereditary blood disorders. Proceedings of the National Academy of Sciences. 2018;115(38):9574–9579
2018
-
[4]
Physical mechanisms of red blood cell splenic filtration
Moreau A, Yaya F, Lu H, Surendranath A, Charrier A, Dehapiot B, et al. Physical mechanisms of red blood cell splenic filtration. Proceedings of the National Academy of Sciences. 2023;120(44):e2300095120
2023
-
[5]
New membrane concept applied to the analysis of fluid shear- and micropipette-deformed red blood cells
Evans EA. New membrane concept applied to the analysis of fluid shear- and micropipette-deformed red blood cells. Biophysical Journal. 1973;13(9):941–954
1973
-
[6]
Erythrocyte flow through the interendothelial slits of the splenic venous sinus
Dao M, MacDonald I, Asaro RJ. Erythrocyte flow through the interendothelial slits of the splenic venous sinus. Biomechanics and Modeling in Mechanobiology. 2021;20(6):2227–2245
2021
-
[7]
Red cell membrane: past, present, and future
Mohandas N, Gallagher PG. Red cell membrane: past, present, and future. Blood. 2008;112(10):3939–3948
2008
-
[8]
Blood rheology and hemodynamics
Baskurt OK, Meiselman HJ. Blood rheology and hemodynamics. Seminars in Thrombosis and Hemostasis. 2003;29:435–450
2003
Show all 69 references
-
[9]
Blood rheology: key parameters, impact on blood flow, role in sickle cell disease and effects of exercise
Nader E, Skinner S, Romana M, Fort R, Lemonne N, Guillot N, et al. Blood rheology: key parameters, impact on blood flow, role in sickle cell disease and effects of exercise. Frontiers in Physiology. 2019;10:1329
2019
-
[10]
The effect of rigid cells on blood viscosity: linking rheology and sickle cell anemia
Perazzo A, Peng Z, Young YN, Feng Z, Wood DK, Higgins JM, et al. The effect of rigid cells on blood viscosity: linking rheology and sickle cell anemia. Soft Matter. 2022;18(3):554–565. July 27, 2026 27/32
2022
-
[11]
Membrane assembly and remodeling during reticulocyte maturation
Chasis JA, Prenant M, Leung A, Mohandas N. Membrane assembly and remodeling during reticulocyte maturation. Blood. 1989;74(3):1112–1120
1989
-
[12]
Senescence of red blood cells: progress and problems
Clark MR. Senescence of red blood cells: progress and problems. Physiological Reviews. 1988;68(2):503–554
1988
-
[13]
Significant biochemical, biophysical and metabolic diversity in circulating human cord blood reticulocytes
Malleret B, Xu F, Mohandas N, Suwanarusk R, Chu C, Leite JA, et al. Significant biochemical, biophysical and metabolic diversity in circulating human cord blood reticulocytes. PLoS ONE. 2013;8(10):e76062
2013
-
[14]
Impact of surface-area-to-volume ratio, internal viscosity and membrane viscoelasticity on red blood cell deformability measured in isotonic condition
Renoux C, Faivre M, Bessaa A, Costa L, Joly P, Gauthier A, et al. Impact of surface-area-to-volume ratio, internal viscosity and membrane viscoelasticity on red blood cell deformability measured in isotonic condition. Scientific Reports. 2019;9:6771
2019
-
[15]
Biomechanics of red blood cells in human spleen and consequences for physiology and disease
Pivkin IV, Peng Z, Karniadakis GE, Buffet PA, Dao M, Suresh S. Biomechanics of red blood cells in human spleen and consequences for physiology and disease. Proceedings of the National Academy of Sciences. 2016;113(28):7804–7809
2016
-
[16]
How the spleen reshapes and retains young and old red blood cells: a computational investigation
Li H, Liu ZL, Lu L, Buffet P, Karniadakis GE. How the spleen reshapes and retains young and old red blood cells: a computational investigation. PLoS Computational Biology. 2021;17(11):e1009516
2021
-
[17]
Kinetics of red blood cell passage through interendothelial slits into venous sinuses in rat spleen, analyzed by in vivo microscopy
MacDonald IC, Ragan DM, Schmidt EE, Groom AC. Kinetics of red blood cell passage through interendothelial slits into venous sinuses in rat spleen, analyzed by in vivo microscopy. Microvascular Research. 1987;33(1):118–134
1987
-
[18]
Quantitative assessment of sensing and sequestration of spherocytic erythrocytes by the human spleen
Safeukui I, Buffet PA, Deplaine G, Perrot S, Brousse V, Ndour A, et al. Quantitative assessment of sensing and sequestration of spherocytic erythrocytes by the human spleen. Blood. 2012;120(2):424–430
2012
-
[19]
Sensing of red blood cells with decreased membrane deformability by the human spleen
Safeukui I, Buffet PA, Deplaine G, Perrot S, Brousse V, Sauvanet A, et al. Sensing of red blood cells with decreased membrane deformability by the human spleen. Blood Advances. 2018;2(20):2581–2587
2018
-
[20]
A Multiscale Signaling-Biophysical Framework Reveals Mechanisms of Macrophage-Mediated RBC Clearance in Sickle Cell and Gaucher Disease
Chai Z, Ahmadi Daryakenari N, Karniadakis GE. A Multiscale Signaling-Biophysical Framework Reveals Mechanisms of Macrophage-Mediated RBC Clearance in Sickle Cell and Gaucher Disease. bioRxiv. 2026; p. 2026.04.20.719505. doi:10.1101/2026.04.20.719505
2026 doi
-
[21]
The 2018 Lake Louise Acute Mountain Sickness Score
Roach RC, Hackett PH, Oelz O, B¨ artsch P, Luks AM, MacInnis MJ, et al. The 2018 Lake Louise Acute Mountain Sickness Score. High Altitude Medicine & Biology. 2018;19(1):4–6. doi:10.1089/ham.2017.0164
2018
-
[22]
The Human Spleen During Physiological Stress
Stewart IB, McKenzie DC. The Human Spleen During Physiological Stress. Sports Medicine. 2002;32(6):361–369. doi:10.2165/00007256-200232060-00002
2002 doi
-
[23]
Making a virtue out of an evil: are red blood cells from chronic mountain sickness patients eligible for transfusions? American Journal of Hematology
Stauffer E, Pichon AP, Champigneulle B, Furian M, Hancco I, Darras A, et al. Making a virtue out of an evil: are red blood cells from chronic mountain sickness patients eligible for transfusions? American Journal of Hematology. 2024;99(12):2310–2319
2024
-
[24]
The Splenic Syndrome in Individuals with Sickle Cell Trait
Goodman J, Hassell K, Irwin D, Witkowski EH, Nuss R. The Splenic Syndrome in Individuals with Sickle Cell Trait. High Altitude Medicine & Biology. 2014;15(4):468–471. doi:10.1089/ham.2014.1034. July 27, 2026 28/32
2014
-
[25]
Combined simulation and experimental study of large deformation of red blood cells in microfluidic systems
Quinn DJ, Pivkin I, Wong SY, Chiam KH, Dao M, Karniadakis GE, et al. Combined simulation and experimental study of large deformation of red blood cells in microfluidic systems. Annals of Biomedical Engineering. 2011;39(3):1041–1050
2011
-
[26]
Microfluidic study of retention and elimination of abnormal red blood cells by human spleen with implications for sickle cell disease
Qiang Y, Sissoko A, Liu ZL, Dong T, Zheng F, Kong F, et al. Microfluidic study of retention and elimination of abnormal red blood cells by human spleen with implications for sickle cell disease. Proceedings of the National Academy of Sciences. 2023;120(6):e2217607120
2023
-
[27]
Morphology, repulsion, and ordering of red blood cells in viscoelastic flows under confinement
Recktenwald SM, Rashidi Y, Graham I, Arratia PE, Del Giudice F, Wagner C. Morphology, repulsion, and ordering of red blood cells in viscoelastic flows under confinement. Soft Matter. 2024;20(25):4950–4963
2024
-
[28]
OpenRBC: a fast simulator of red blood cells at protein resolution
Tang YH, Lu L, Li H, Evangelinos C, Grinberg L, Sachdeva V, et al. OpenRBC: a fast simulator of red blood cells at protein resolution. Biophysical Journal. 2017;112(10):2030–2037
2017
-
[29]
Dynamics of the axon plasma membrane skeleton
Chai Z, Gu S, Lykotrafitis G. Dynamics of the axon plasma membrane skeleton. Soft Matter. 2023;19(14):2514–2528
2023
-
[30]
The periodic axon membrane skeleton leads to Na nanodomains but does not impact action potentials
Chai Z, Tzingounis A V, Lykotrafitis G. The periodic axon membrane skeleton leads to Na nanodomains but does not impact action potentials. Biophysical Journal. 2022;121(18):3334–3344
2022
-
[31]
MD/DPD multiscale framework for predicting morphology and stresses of red blood cells in health and disease
Chang HY, Li X, Li H, Karniadakis GE. MD/DPD multiscale framework for predicting morphology and stresses of red blood cells in health and disease. PLOS Computational Biology. 2016;12(10):e1005173
2016
-
[32]
Deep reinforcement learning with a particle dynamics environment applied to emergency evacuation of a room with obstacles
Zhang Y, Chai Z, Lykotrafitis G. Deep reinforcement learning with a particle dynamics environment applied to emergency evacuation of a room with obstacles. Physica A: Statistical Mechanics and its Applications. 2021;571:125845
2021
-
[33]
A deep reinforcement learning model based on deterministic policy gradient for collective neural crest cell migration
Zhang Y, Chai Z, Sun Y, Lykotrafitis G. A deep reinforcement learning model based on deterministic policy gradient for collective neural crest cell migration. arXiv preprint arXiv:200703190. 2020
2020
-
[34]
A multiscale red blood cell model with accurate mechanics, rheology, and dynamics
Fedosov DA, Caswell B, Karniadakis GE. A multiscale red blood cell model with accurate mechanics, rheology, and dynamics. Biophysical Journal. 2010;98(10):2215–2225
2010
-
[35]
Multiscale modeling of red blood cell mechanics and blood flow in malaria
Fedosov DA, Lei H, Caswell B, Suresh S, Karniadakis GE. Multiscale modeling of red blood cell mechanics and blood flow in malaria. PLOS Computational Biology. 2011;7(12):e1002270
2011
-
[36]
Predicting human blood viscosity in silico
Fedosov DA, Pan W, Caswell B, Gompper G, Karniadakis GE. Predicting human blood viscosity in silico. Proceedings of the National Academy of Sciences. 2011;108(29):11772–11777
2011
-
[37]
Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation
Groot RD, Warren PB. Dissipative particle dynamics: bridging the gap between atomistic and mesoscopic simulation. The Journal of Chemical Physics. 1997;107(11):4423–4435
1997
-
[38]
Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics
Hoogerbrugge PJ, Koelman JMV A. Simulating microscopic hydrodynamic phenomena with dissipative particle dynamics. Europhysics Letters. 1992;19(3):155–160. July 27, 2026 29/32
1992
-
[39]
GRAFT-ATHENA: Self-Improving Agentic Teams for Autonomous Discovery and Evolutionary Numerical Algorithms
Toscano JD, Chai Z, Karniadakis GE. GRAFT-ATHENA: Self-Improving Agentic Teams for Autonomous Discovery and Evolutionary Numerical Algorithms. arXiv preprint arXiv:260511117. 2026;doi:10.48550/arXiv.2605.11117
-
[40]
Quantifying the biophysical properties of stomatocytes in health and disease
Chai Z, Zheng J, Li H, Dao M, Karniadakis GE. Quantifying the biophysical properties of stomatocytes in health and disease. arXiv preprint arXiv:260605227. 2026
2026
-
[41]
Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network
Li H, Lykotrafitis G. Erythrocyte membrane model with explicit description of the lipid bilayer and the spectrin network. Biophysical Journal. 2014;107(3):642–653
2014
-
[42]
Modeling of band-3 protein diffusion in the normal and defective red blood cell membrane
Li H, Zhang Y, Ha V, Lykotrafitis G. Modeling of band-3 protein diffusion in the normal and defective red blood cell membrane. Soft matter. 2016;12(15):3643–3653
2016
-
[43]
Strain Energy Function of Red Blood Cell Membranes
Skalak R, Tozeren A, Zarda RP, Chien S. Strain Energy Function of Red Blood Cell Membranes. Biophysical Journal. 1973;13(3):245–264. doi:10.1016/S0006-3495(73)85983-1
1973 doi
-
[44]
Elastic Properties of Lipid Bilayers: Theory and Possible Experiments
Helfrich W. Elastic Properties of Lipid Bilayers: Theory and Possible Experiments. Zeitschrift f¨ ur Naturforschung C. 1973;28(11–12):693–703. doi:10.1515/znc-1973-11-1209
1973 doi
-
[45]
Connections between single-cell biomechanics and human disease states: gastrointestinal cancer and malaria
Suresh S, Spatz J, Mills JP, Micoulet A, Dao M, Lim CT, et al. Connections between single-cell biomechanics and human disease states: gastrointestinal cancer and malaria. Acta Biomaterialia. 2005;1(1):15–30
2005
-
[46]
Evolution of surface area and membrane shear modulus of matured human red blood cells during mechanical fatigue
Wei Q, Wang X, Zhang C, Dao M, Gong X. Evolution of surface area and membrane shear modulus of matured human red blood cells during mechanical fatigue. Scientific Reports. 2023;13(1):8563
2023
-
[47]
Abnormal properties of red blood cells suggest a role in the pathophysiology of Gaucher disease
Franco M, Collec E, Connes P, van den Akker E, Billette de Villemeur T, Belmatoug N, et al. Abnormal properties of red blood cells suggest a role in the pathophysiology of Gaucher disease. Blood. 2013;121(3):546–555
2013
-
[48]
In silico biophysics and rheology of blood and red blood cells in Gaucher disease
Chai Z, Li G, Ndour PA, Connes P, Buffet PA, Franco M, et al. In silico biophysics and rheology of blood and red blood cells in Gaucher disease. PLOS Computational Biology. 2025;21(9):e1012705
2025
-
[49]
Quantifying fibrinogen-dependent aggregation of red blood cells in type 2 diabetes mellitus
Deng Y, Papageorgiou DP, Li X, Perakakis N, Mantzoros CS, Dao M, et al. Quantifying fibrinogen-dependent aggregation of red blood cells in type 2 diabetes mellitus. Biophysical Journal. 2020;119(5):900–912
2020
-
[50]
Red blood cell deformability during storage: towards functional proteomics and metabolomics in the blood bank
Cluitmans JCA, Hardeman MR, Dinkla S, Brock R, Bosman GJCGM. Red blood cell deformability during storage: towards functional proteomics and metabolomics in the blood bank. Blood Transfusion. 2012;10(Suppl 2):s12
2012
-
[51]
Measuring red blood cell deformability and its heterogeneity using a fast microfluidic device
Kumari S, Mehendale N, Roy T, Sen S, Mitra D, Paul D. Measuring red blood cell deformability and its heterogeneity using a fast microfluidic device. Cell Reports Physical Science. 2024;5(8):102093
2024
-
[52]
Kinetics of sickle cell biorheology and implications for painful vasoocclusive crisis
Du E, Diez-Silva M, Kato GJ, Dao M, Suresh S. Kinetics of sickle cell biorheology and implications for painful vasoocclusive crisis. Proceedings of the National Academy of Sciences. 2015;112(5):1422–1427. July 27, 2026 30/32
2015
-
[53]
Mechanical fatigue of human red blood cells
Qiang Y, Liu J, Dao M, Suresh S, Du E. Mechanical fatigue of human red blood cells. Proceedings of the National Academy of Sciences. 2019;116(40):19828–19834
2019
-
[54]
Regulation of Blood Volume in Lowlanders Exposed to High Altitude
Siebenmann C, Robach P, Lundby C. Regulation of Blood Volume in Lowlanders Exposed to High Altitude. Journal of Applied Physiology. 2017;123(4):957–966. doi:10.1152/japplphysiol.00118.2017
2017
-
[55]
Microfluidic assessment of red blood cell mediated microvascular occlusion
Man Y, Kucukal E, An R, Watson QD, Bosch J, Zimmerman PA, et al. Microfluidic assessment of red blood cell mediated microvascular occlusion. Lab on a Chip. 2020;20(12):2086–2099
2020
-
[56]
Quantifying the rheological and hemodynamic characteristics of sickle cell anemia
Lei H, Karniadakis GE. Quantifying the rheological and hemodynamic characteristics of sickle cell anemia. Biophysical Journal. 2012;102(2):185–194
2012
-
[57]
Quantifying shear-induced deformation and detachment of individual adherent sickle red blood cells
Deng Y, Papageorgiou DP, Chang H, Abidi SZ, Li X, Dao M, et al. Quantifying shear-induced deformation and detachment of individual adherent sickle red blood cells. Biophysical Journal. 2019;116(2):360–371
2019
-
[58]
Shear dependence of effective cell volume as a determinant of blood viscosity
Chien S. Shear dependence of effective cell volume as a determinant of blood viscosity. Science. 1970;168(3934):977–979
1970
-
[59]
Blood-viscosity in diabetic patients
Skovborg F, Nielsen A V, Schlichtkrull J, Ditzel J. Blood-viscosity in diabetic patients. The Lancet. 1966;287(7429):129–131
1966
-
[60]
Application of Ree–Eyring generalized flow theory to suspensions of spherical particles
Maron SH, Pierce PE. Application of Ree–Eyring generalized flow theory to suspensions of spherical particles. Journal of Colloid Science. 1956;11(1):80–95
1956
-
[61]
In silico biophysics and hemorheology of blood hyperviscosity syndrome
Javadi E, Deng Y, Karniadakis GE, Jamali S. In silico biophysics and hemorheology of blood hyperviscosity syndrome. Biophysical Journal. 2021;120(13):2723–2733
2021
-
[62]
Circulating cell clusters aggravate the hemorheological abnormalities in COVID-19
Javadi E, Li H, Gallastegi AD, Frydman GH, Jamali S, Karniadakis GE. Circulating cell clusters aggravate the hemorheological abnormalities in COVID-19. Biophysical Journal. 2022;121(18):3309–3319
2022
-
[63]
New guidelines for hemorheological laboratory techniques
Baskurt O, Boynard M, Cokelet G, Connes P, Cooke BM, Forconi S, et al. New guidelines for hemorheological laboratory techniques. Clinical Hemorheology and Microcirculation. 2009;42(2):75–97
2009
-
[64]
High-Altitude Erythrocytosis: Mechanisms of Adaptive and Maladaptive Responses
Villafuerte FC, Simonson TS, Bermudez D, Le´ on-Velarde F. High-Altitude Erythrocytosis: Mechanisms of Adaptive and Maladaptive Responses. Physiology. 2022;37(4):175–186. doi:10.1152/physiol.00029.2021
2022
-
[65]
Hemoglobin-Oxygen Affinity in High-Altitude Vertebrates: Is There Evidence for an Adaptive Trend? Journal of Experimental Biology
Storz JF. Hemoglobin-Oxygen Affinity in High-Altitude Vertebrates: Is There Evidence for an Adaptive Trend? Journal of Experimental Biology. 2016;219(20):3190–3203. doi:10.1242/jeb.127134
2016 doi
-
[66]
The Overlooked Significance of Plasma Volume for Successful Adaptation to High Altitude in Sherpa and Andean Natives
Stembridge M, Williams AM, Gasho C, Dawkins TG, Drane A, Villafuerte FC, et al. The Overlooked Significance of Plasma Volume for Successful Adaptation to High Altitude in Sherpa and Andean Natives. Proceedings of the National Academy of Sciences. 2019;116(33):16177–16179. doi:...
2019 doi
-
[67]
Two Routes to Functional Adaptation: Tibetan and Andean High-Altitude Natives
Beall CM. Two Routes to Functional Adaptation: Tibetan and Andean High-Altitude Natives. Proceedings of the National Academy of Sciences. 2007;104(suppl 1):8655–8660. doi:10.1073/pnas.0701985104. July 27, 2026 31/32
2007 doi
-
[68]
Genetic Evidence for High-Altitude Adaptation in Tibet
Simonson TS, Yang Y, Huff CD, Yun H, Qin G, Witherspoon DJ, et al. Genetic Evidence for High-Altitude Adaptation in Tibet. Science. 2010;329(5987):72–75. doi:10.1126/science.1189406
2010 doi
-
[69]
Two-component macrophage model for active phagocytosis with pseudopod formation
Wang S, Ma S, Li H, Dao M, Li X, Karniadakis GE. Two-component macrophage model for active phagocytosis with pseudopod formation. Biophysical Journal. 2024;123(9):1069–1084. July 27, 2026 32/32
2024
Reviewed August 1, 2026 · model on record in the stance chip above.
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