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Recurrent Neural Network-based Model for Accelerated Trajectory Analysis in AIMD Simulations

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arxiv 1909.10124 v2 pith:Y3GBSYWU submitted 2019-09-23 physics.comp-ph cs.AI

classification physics.comp-phcs.AI
keywords aimdnetworksrecurrentrnnssimulationsacceleratedmodelmulti-variate
verification ladder T0 review T1 audit T2 compute T3 formal
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The presented work demonstrates the training of recurrent neural networks (RNNs) from distributions of atom coordinates in solid state structures that were obtained using ab initio molecular dynamics (AIMD) simulations. AIMD simulations on solid state structures are treated as a multi-variate time-series problem. By referring interactions between atoms over the simulation time to temporary correlations among them, RNNs find patterns in the multi-variate time-dependent data, which enable forecasting trajectory paths and potential energy profiles. Two types of RNNs, namely gated recurrent unit and long short-term memory networks, are considered. The model is described and compared against a baseline AIMD simulation on an iridium oxide slab. Findings demonstrate that both networks can potentially be harnessed for accelerated statistical sampling in computational materials research.

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  1. Predicting Thermodynamics of Liquid Water from Time Series Analysis

    physics.chem-ph 2025-06 reject novelty 5.0 of 10

    A GRU neural network trained on ring-statistics time series from TIP4P/2005 water simulations predicts thermodynamic response functions, with mixed extrapolation accuracy to unseen isobars.

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