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A Cross-Field Fusion Strategy for Drug-Target Interaction Prediction

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arxiv 2405.14545 v1 pith:ZFK5RMSS submitted 2024-05-23 q-bio.BM cs.LG

classification q-bio.BMcs.LG
keywords drug-targetdrugsinteractionpredictiontargetscross-fielddruginformation
verification ladder T0 review T1 audit T2 compute T3 formal
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Drug-target interaction (DTI) prediction is a critical component of the drug discovery process. In the drug development engineering field, predicting novel drug-target interactions is extremely crucial.However, although existing methods have achieved high accuracy levels in predicting known drugs and drug targets, they fail to utilize global protein information during DTI prediction. This leads to an inability to effectively predict interaction the interactions between novel drugs and their targets. As a result, the cross-field information fusion strategy is employed to acquire local and global protein information. Thus, we propose the siamese drug-target interaction SiamDTI prediction method, which utilizes a double channel network structure for cross-field supervised learning.Experimental results on three benchmark datasets demonstrate that SiamDTI achieves higher accuracy levels than other state-of-the-art (SOTA) methods on novel drugs and targets.Additionally, SiamDTI's performance with known drugs and targets is comparable to that of SOTA approachs. The code is available at https://anonymous.4open.science/r/DDDTI-434D.

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Cited by 2 Pith papers

Reviewed papers in the Pith corpus that reference this work. Sorted by Pith novelty score. Full citation record

  1. Zero-Shot Learning with Subsequence Reordering Pretraining for Compound-Protein Interaction

    cs.LG 2025-07 conditional novelty 6.0 of 10

    A subsequence-reordering pretraining objective with variable-length protein cuts improves zero-shot compound-protein interaction prediction and is data-efficient relative to large protein language models.

  2. Graph-structured Small Molecule Drug Discovery Through Deep Learning: Progress, Challenges, and Opportunities

    cs.LG 2025-02 conditional novelty 3.0 of 10

    A structured review of graph-based deep learning for small molecule drug discovery, organized around six prediction and generation tasks.

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